Detail information of GWHGAAEX017126/evm.TU.scaffold_8.199


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08006.00E-86FOG: Predicted E3 ubiquitin ligase
nrgi|743841659|ref|XP_010937587.1|3.04E-131PREDICTED: E3 ubiquitin-protein ligase RING1-like [Elaeis guineensis]
Swissprottr|P0CH30|RING1_GOSHI6.00E-35E3 ubiquitin-protein ligase RING1
trEMBLtr|M0RES0|M0RES0_MUSAM6.00E-122Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P02430_001}
TAIRAT3G466206.00E-86zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000483956738404381+
Transcript Sequence

Network for GWHGAAEX017126

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14369.5zinc_ribbon_914451.10E-11
PF13639.5zf-RING_21752161.40E-10
PF06547.11DUF11172423324.20E-37
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0061630Molecular Functionubiquitin protein ligase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms84.460
SRR2545915Juvenile tuber35.420
SRP108465SRR5643513five period of Gastrodia elata39.730
SRR5643514five period of Gastrodia elata34.290
SRR5643515five period of Gastrodia elata33.620
SRR5643524five period of Gastrodia elata34.550
SRR5643525five period of Gastrodia elata33.260
SRR5643528five period of Gastrodia elata35.280
SRR5643658five period of Gastrodia elata24.320
SRR5643659five period of Gastrodia elata29.250
SRR5643660five period of Gastrodia elata30.010
SRR5643661five period of Gastrodia elata28.520
SRR5643662five period of Gastrodia elata31.260
SRR5643663five period of Gastrodia elata27.770
SRR5643664five period of Gastrodia elata32.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_156.030
SRR6049655Rhizomagastrodiae_C368-T10_good_147.040
SRR6049656Rhizomagastrodiae_C368-T07_good_142.410
SRR6049657Rhizomagastrodiae_C368-T07_good_179.950
SRR6049658Rhizomagastrodiae_C368-T04_good_180.550
SRR6049659Rhizomagastrodiae_C368-T04_good_1104.560
SRR6049660Rhizomagastrodiae_C368-T01_good_169.480
SRR6049661Rhizomagastrodiae_C368-T04_good_171.080
SRR6049662Rhizomagastrodiae_C368-T01_good_140.540
SRR6049663Rhizomagastrodiae_C368-T01_good_141.070
SRR6049664Rhizomagastrodiae_C368-T10_good_134.740
SRR6049665Rhizomagastrodiae_C368-T10_good_134.740
SRP279888GastroGastrodia elata tuber 34.13
JuvenJuvenile tuber57.46
Mother_GastroMother tuber of Gastrodia elata 50.89
Mother_JuvenMother tuber of Juvenile 80.34