Detail information of GWHGAAEX017133/evm.TU.scaffold_8.213
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 2.00E-21 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|720003241|ref|XP_010256925.1| | 0 | PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera] |
| Swissprot | tr|P46573|APK1B_ARATH | 0 | Protein kinase APK1B, chloroplastic (Precursor) |
| trEMBL | tr|V4SC26|V4SC26_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR38077.1} |
| TAIR | AT2G28930 | 0 | protein kinase 1B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 8932274 | 8951523 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017133
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 80 | 358 | 3.60E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-VIIa-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.120 |
| SRR2545915 | Juvenile tuber | 16.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.540 |
| SRR5643514 | five period of Gastrodia elata | 24.110 | |
| SRR5643515 | five period of Gastrodia elata | 22.650 | |
| SRR5643524 | five period of Gastrodia elata | 23.290 | |
| SRR5643525 | five period of Gastrodia elata | 18.420 | |
| SRR5643528 | five period of Gastrodia elata | 15.960 | |
| SRR5643658 | five period of Gastrodia elata | 21.950 | |
| SRR5643659 | five period of Gastrodia elata | 26.700 | |
| SRR5643660 | five period of Gastrodia elata | 17.940 | |
| SRR5643661 | five period of Gastrodia elata | 23.600 | |
| SRR5643662 | five period of Gastrodia elata | 17.790 | |
| SRR5643663 | five period of Gastrodia elata | 18.560 | |
| SRR5643664 | five period of Gastrodia elata | 20.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.66 |
| Juven | Juvenile tuber | 15.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.05 | |
| Mother_Juven | Mother tuber of Juvenile | 7.34 |