Gene detail

Detail information of GWHGAAEX017134/evm.TU.scaffold_8.215

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	5.00E-123	Transcription factor, Myb superfamily
nr	gi\|672165637\|ref\|XP_008802730.1\|	9.60E-163	PREDICTED: uncharacterized protein LOC103716487 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9S7G7\|MB3R1_ARATH	1.00E-79	Myb-related protein 3R-1
trEMBL	tr\|I1N2H1\|I1N2H1_SOYBN	2.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G39740.1}
TAIR	AT5G02320	5.00E-123	myb domain protein 3r-5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	8978186	9001783	-

Transcript Sequence
>GWHTAAEX017134 CGGCTCCCTCCGCCGCTGTCAGTTTTCCTGAATTTAATTGTTTATTTTTTAATTTTTTTCTTTTTTGTTTTGCTTTCCTTCAACGGGCGAGATATCAACGGGCGAGGTATTTTTCACCTTTATGTTTTGAAAGGAACCGCTTTATTGTATTCTAGGGTTACATCTCTCCTGCCGTTGTTTCGATCGCGCAGTCCTCCTATTCAACAACCAGCCTGTGGCAACCGCTTCCATGAATTTTGTCTTCGATTGTATGTTCTCGTGATCTGCGGAAAGAATTATTTCGATTTTTGAATCACCCTCGGGGGCAAAAGTCACTGATTCCTCAGATTTTGATTCGAAACCCGAAGTTCACGCCTGCTTCTAAAATATTTGCTTTTCCATTTGGTTTATTTTGCCTGGGAATTGCGGTGTCGCTGTTGTTTGCGTTCGCGTGCGTGTCTTCTTCCTGTCGTTACAGCGTTTTTCCGGATTTTGTTGTTTTGGTTGCCGGCTTCGGGGTTTGTTCAATTTAAGGCATGAATTTTTTGAAGACAGAGGAAAGCTGTGTGGAGAATAAGCAAACCATTGCTGCATCAGGCTCTTCGATTTCAGAGGGGAGCTCTGGATTCTCGGCGTTGTCGCCCGCTTGCAGTCCTGCGACTTCATCTCCCAATCATAGGAGAACAAGTGGTCCCATAAGGCGAGCAAAAGGAGGCTGGACACCGAACGAAGACGAGACTCTTAGACGAGCAGTTGAATTACATAAAGGAAGGAATTGGAAGAAAATAGCTGAATCTGTTCCGGGTAGGACAGAAGTGCAATGCTTGCATCGTTGGCAAAAGGTTCTTAATCCAGATCTTATCAAAGGCCCATGGACTCCAGAGGAAGATGATGTCATCATCAAACTTGTTGCCAAGTACGGGCCAACAAAATGGTCTGTAATTGCTGGATCTCTTCCTGGTAGAATTGGAAAACAATGTCGAGAGAGGTGGCACAATCATTTAAACCCAGAAATAAGGAAAGATGCTTGGACTTCTGAGGAGGAGATGGAGCTCATGAGAGCTCACCTTCTACATGGAAATAAATGGGCTGAAATTGCAAAGATGTTACCCGGAAGGTCTGACAATTCAATAAAAAATCACTGGAACAGTTCCTTGAGAAAAAGGTCGGAGATCTACGCAAAAACTGGTAAATTTCCTTCTGTTCAGAAGCCTGTAGTTCGGAATGCTGCCAAAGACACTCCAAACTCTGGCGACACAAAATTTTTTTATTGCTTTAATAATACAACTATTGCAAGCGGTAATACTCTACCCGAAAAATGCTCAGTCATTCCATATAATTCTCCAACTGAGATTCCTGAAGCAGCAACAAGCCAGAAAGATGCGGCCACAACTCTGTCTGCTCAAGCTTCTGATTTGAGCGCCATGCTGGATGCTGAAGCAAGACTATCAGATACTTCTGATGCCCAGGCTTGTTACCAAGCCCGAGGATCTGAAAACAATAATCTTGTACAGATTAATAGATCTGAGCCCTTAGTTAATCCAGATGACTGTAGCTACAATATAGAAGCTCACAGAAATGAGGAACCTTTTGAAACAACTCTCCGTTCAGGCCCTGATAAAGTTGGTTCTCTTTGCTATAAGCCGCCTATATTAGAAGATCTTGGGACCGCCTCTGCTGCCTCTTCCCCTCTCTTTTTTGGACACAGCTCCACACAATCGGCTTCAGATCATGAGATGCTTTCTTCTCCCATCTGTTATTCAACCCCACCACCCTCTCTGAATGCTGTGATAACCTGCAGGCCGAGCTTTGAATCTGTCCTGAAAAGTGCAGCCAGAAGTTTTCCAAACACCCCTTCCATAATTAAAAGGAGAAAAGAAGCGCATACAACTCTTCTTCATCCCGAATCTGTAGATACTATTGAAGGATCATCCACCAGTAAACTGTCAAACTTGTTTTCAAGCCCCGACACAATTTCTGGAAGCTCATTGGACTATGAAAAGAATTTCAACATTTCGCCAGTTTACCGATTGCGGCCCAAGAGAAAGTCGACTTTCAAATCGCTTGAGAAACAGCTTGATTTCACAATGGAAGGCACGGGGTCAGAGAGCAATGTTAATAATATTTCAAATTTGGCAATTAGCCAGAACTCTTGCTGTCCTACTAATATGCAGTTCTTAAGCATATAGAGAAACTGGGGAGATGGATTATATCCCGTCCAGCTGAATTTGGAGAAATGGATTTCTCCCGTGAAGCCAATTTTGAACCACATAAAGAGAAGGTTGAATTGTATAGTTAAGATTTGGGATGGGAATGATACGCTTACACAACAATCTTAATAAGATTCTGCAGATTTTTATTAGATTTTTGGGGCAGCCAAATTTTCCTGTTTTTTTTTTTTTTTT

Network for GWHGAAEX017134

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	58	104	8.00E-17
PF00249.30	Myb_DNA-binding	110	156	2.70E-17
PF00249.30	Myb_DNA-binding	162	205	9.90E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.350
SRP064423	SRR2545915	Juvenile tuber	4.980
SRP108465	SRR5643513	five period of Gastrodia elata	4.700
	SRR5643514	five period of Gastrodia elata	4.640
	SRR5643515	five period of Gastrodia elata	5.320
	SRR5643524	five period of Gastrodia elata	4.870
	SRR5643525	five period of Gastrodia elata	7.170
	SRR5643528	five period of Gastrodia elata	5.580
	SRR5643658	five period of Gastrodia elata	4.600
	SRR5643659	five period of Gastrodia elata	5.470
	SRR5643660	five period of Gastrodia elata	6.060
	SRR5643661	five period of Gastrodia elata	5.530
	SRR5643662	five period of Gastrodia elata	7.110
	SRR5643663	five period of Gastrodia elata	5.060
	SRR5643664	five period of Gastrodia elata	4.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.300
SRP279888	Gastro	Gastrodia elata tuber	8.32
	Juven	Juvenile tuber	7.75
	Mother_Gastro	Mother tuber of Gastrodia elata	14.48
	Mother_Juven	Mother tuber of Juvenile	15.06