Detail information of GWHGAAEX017141/evm.TU.scaffold_8.230
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-152 | FOG: PPR repeat |
| nr | gi|672165726|ref|XP_008802777.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Phoenix dactylifera] |
| Swissprot | tr|A8MQA3|PP330_ARATH | 9.00E-161 | Pentatricopeptide repeat-containing protein At4g21065 |
| trEMBL | tr|Q84TA9|Q84TA9_ORYSJ | 0 | cDNA clone:J033116F23, full insert sequence {ECO:0000313|EMBL:BAG95827.1} |
| TAIR | AT5G06540 | 2.00E-152 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 9403734 | 9406366 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017141
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 189 | 233 | 1.90E-08 |
| PF13041.5 | PPR_2 | 287 | 335 | 6.70E-10 |
| PF01535.19 | PPR | 362 | 387 | 0.011 |
| PF14432.5 | DYW_deaminase | 462 | 585 | 6.00E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.640 |
| SRR2545915 | Juvenile tuber | 1.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.400 |
| SRR5643514 | five period of Gastrodia elata | 4.010 | |
| SRR5643515 | five period of Gastrodia elata | 3.410 | |
| SRR5643524 | five period of Gastrodia elata | 3.000 | |
| SRR5643525 | five period of Gastrodia elata | 3.490 | |
| SRR5643528 | five period of Gastrodia elata | 2.110 | |
| SRR5643658 | five period of Gastrodia elata | 2.950 | |
| SRR5643659 | five period of Gastrodia elata | 3.520 | |
| SRR5643660 | five period of Gastrodia elata | 3.980 | |
| SRR5643661 | five period of Gastrodia elata | 4.380 | |
| SRR5643662 | five period of Gastrodia elata | 4.510 | |
| SRR5643663 | five period of Gastrodia elata | 3.090 | |
| SRR5643664 | five period of Gastrodia elata | 4.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.68 |
| Juven | Juvenile tuber | 2.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.86 | |
| Mother_Juven | Mother tuber of Juvenile | 1.45 |