Detail information of GWHGAAEX017145/evm.TU.scaffold_8.234
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502232|ref|YP_001957949.1| | 8.00E-16 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 0 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|743787193|ref|XP_010922355.1| | 0 | PREDICTED: protein spotted leaf 11-like [Elaeis guineensis] |
| Swissprot | tr|Q9SNC6|PUB13_ARATH | 0 | U-box domain-containing protein 13 |
| trEMBL | tr|A0A067LAL3|A0A067LAL3_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP44223.1} |
| TAIR | AT3G46510 | 0 | plant U-box 13 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 9558532 | 9573710 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017145
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 260 | 330 | 3.90E-20 |
| PF00514.22 | Arm | 385 | 424 | 3.30E-10 |
| PF00514.22 | Arm | 468 | 506 | 1.30E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007166 | Biological Process | cell surface receptor signaling pathway |
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 415.050 |
| SRR2545915 | Juvenile tuber | 264.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 116.560 |
| SRR5643514 | five period of Gastrodia elata | 106.040 | |
| SRR5643515 | five period of Gastrodia elata | 98.430 | |
| SRR5643524 | five period of Gastrodia elata | 92.060 | |
| SRR5643525 | five period of Gastrodia elata | 160.290 | |
| SRR5643528 | five period of Gastrodia elata | 119.120 | |
| SRR5643658 | five period of Gastrodia elata | 179.490 | |
| SRR5643659 | five period of Gastrodia elata | 255.320 | |
| SRR5643660 | five period of Gastrodia elata | 296.420 | |
| SRR5643661 | five period of Gastrodia elata | 243.980 | |
| SRR5643662 | five period of Gastrodia elata | 333.600 | |
| SRR5643663 | five period of Gastrodia elata | 335.820 | |
| SRR5643664 | five period of Gastrodia elata | 443.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 181.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 183.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 144.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 192.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 130.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 136.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 141.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 119.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 99.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 101.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 119.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 119.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 443.39 |
| Juven | Juvenile tuber | 313.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.29 | |
| Mother_Juven | Mother tuber of Juvenile | 142.18 |