Detail information of GWHGAAEX017149/evm.TU.scaffold_8.239


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32302.00E-112Vacuolar assembly/sorting protein DID4
nrgi|743775995|ref|XP_010918392.1|3.39E-133PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Elaeis guineensis]
Swissprottr|Q701F9|VPS2A_ARATH9.00E-120Vacuolar protein sorting-associated protein 2 homolog 1
trEMBLtr|B3TM11|B3TM11_ELAGV1.00E-133Breast adenocarcinoma marker-like {ECO:0000313|EMBL:ACF06592.1}
TAIRAT2G065302.00E-112SNF7 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000497100269734579+
Transcript Sequence

Network for GWHGAAEX017149

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.20Snf7171861.40E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12191CHMP2A Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034Biological Processvacuolar transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms84.740
SRR2545915Juvenile tuber86.840
SRP108465SRR5643513five period of Gastrodia elata92.710
SRR5643514five period of Gastrodia elata98.640
SRR5643515five period of Gastrodia elata112.470
SRR5643524five period of Gastrodia elata97.590
SRR5643525five period of Gastrodia elata164.770
SRR5643528five period of Gastrodia elata135.650
SRR5643658five period of Gastrodia elata159.900
SRR5643659five period of Gastrodia elata60.010
SRR5643660five period of Gastrodia elata54.890
SRR5643661five period of Gastrodia elata65.550
SRR5643662five period of Gastrodia elata59.540
SRR5643663five period of Gastrodia elata57.490
SRR5643664five period of Gastrodia elata54.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_164.730
SRR6049655Rhizomagastrodiae_C368-T10_good_186.610
SRR6049656Rhizomagastrodiae_C368-T07_good_156.710
SRR6049657Rhizomagastrodiae_C368-T07_good_150.280
SRR6049658Rhizomagastrodiae_C368-T04_good_154.160
SRR6049659Rhizomagastrodiae_C368-T04_good_158.720
SRR6049660Rhizomagastrodiae_C368-T01_good_150.620
SRR6049661Rhizomagastrodiae_C368-T04_good_152.890
SRR6049662Rhizomagastrodiae_C368-T01_good_147.240
SRR6049663Rhizomagastrodiae_C368-T01_good_154.120
SRR6049664Rhizomagastrodiae_C368-T10_good_184.680
SRR6049665Rhizomagastrodiae_C368-T10_good_184.680
SRP279888GastroGastrodia elata tuber 61.00
JuvenJuvenile tuber81.51
Mother_GastroMother tuber of Gastrodia elata 154.08
Mother_JuvenMother tuber of Juvenile 166.54