Detail information of GWHGAAEX017150/evm.TU.scaffold_8.240


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08006.00E-19FOG: Predicted E3 ubiquitin ligase
nrgi|728823013|gb|KHG05103.1|3.86E-22RING-H2 finger ATL74 -like protein [Gossypium arboreum]
Swissprottr|Q9FLC6|ATL73_ARATH2.00E-19RING-H2 finger protein ATL73 (Precursor)
trEMBLtr|A0A0A0L622|A0A0A0L622_CUCSA3.00E-21Uncharacterized protein {ECO:0000313|EMBL:KGN55591.1}
TAIRAT5G052806.00E-19RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000497349869736222-
Transcript Sequence

Network for GWHGAAEX017150

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2801234.60E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.560
SRR2545915Juvenile tuber2.380
SRP108465SRR5643513five period of Gastrodia elata10.420
SRR5643514five period of Gastrodia elata16.370
SRR5643515five period of Gastrodia elata8.100
SRR5643524five period of Gastrodia elata20.790
SRR5643525five period of Gastrodia elata21.700
SRR5643528five period of Gastrodia elata16.030
SRR5643658five period of Gastrodia elata29.290
SRR5643659five period of Gastrodia elata0.560
SRR5643660five period of Gastrodia elata1.600
SRR5643661five period of Gastrodia elata0.940
SRR5643662five period of Gastrodia elata2.710
SRR5643663five period of Gastrodia elata2.120
SRR5643664five period of Gastrodia elata8.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.670
SRR6049655Rhizomagastrodiae_C368-T10_good_18.870
SRR6049656Rhizomagastrodiae_C368-T07_good_19.130
SRR6049657Rhizomagastrodiae_C368-T07_good_18.610
SRR6049658Rhizomagastrodiae_C368-T04_good_114.570
SRR6049659Rhizomagastrodiae_C368-T04_good_116.760
SRR6049660Rhizomagastrodiae_C368-T01_good_18.520
SRR6049661Rhizomagastrodiae_C368-T04_good_19.910
SRR6049662Rhizomagastrodiae_C368-T01_good_14.000
SRR6049663Rhizomagastrodiae_C368-T01_good_17.690
SRR6049664Rhizomagastrodiae_C368-T10_good_115.550
SRR6049665Rhizomagastrodiae_C368-T10_good_115.550
SRP279888GastroGastrodia elata tuber 4.00
JuvenJuvenile tuber1.13
Mother_GastroMother tuber of Gastrodia elata 12.99
Mother_JuvenMother tuber of Juvenile 3.53