Detail information of GWHGAAEX017151/evm.TU.scaffold_8.243


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08005.00E-17FOG: Predicted E3 ubiquitin ligase
nrgi|743844339|ref|XP_011027176.1|9.56E-24PREDICTED: RING-H2 finger protein ATL52-like [Populus euphratica]
Swissprottr|Q9LZJ6|ATL5_ARATH1.00E-17RING-H2 finger protein ATL5
trEMBLtr|B9HTJ5|B9HTJ5_POPTR7.00E-23Uncharacterized protein {ECO:0000313|EMBL:EEF02463.2}
TAIRAT3G626905.00E-17AtL5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000497754159775998-
Transcript Sequence

Network for GWHGAAEX017151

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2951382.10E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.900
SRR2545915Juvenile tuber1.950
SRP108465SRR5643513five period of Gastrodia elata25.180
SRR5643514five period of Gastrodia elata21.390
SRR5643515five period of Gastrodia elata21.260
SRR5643524five period of Gastrodia elata18.790
SRR5643525five period of Gastrodia elata2.870
SRR5643528five period of Gastrodia elata2.170
SRR5643658five period of Gastrodia elata5.050
SRR5643659five period of Gastrodia elata4.230
SRR5643660five period of Gastrodia elata2.590
SRR5643661five period of Gastrodia elata7.320
SRR5643662five period of Gastrodia elata9.080
SRR5643663five period of Gastrodia elata4.740
SRR5643664five period of Gastrodia elata7.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.540
SRR6049655Rhizomagastrodiae_C368-T10_good_111.390
SRR6049656Rhizomagastrodiae_C368-T07_good_130.710
SRR6049657Rhizomagastrodiae_C368-T07_good_19.250
SRR6049658Rhizomagastrodiae_C368-T04_good_110.110
SRR6049659Rhizomagastrodiae_C368-T04_good_16.790
SRR6049660Rhizomagastrodiae_C368-T01_good_16.980
SRR6049661Rhizomagastrodiae_C368-T04_good_16.430
SRR6049662Rhizomagastrodiae_C368-T01_good_17.040
SRR6049663Rhizomagastrodiae_C368-T01_good_111.240
SRR6049664Rhizomagastrodiae_C368-T10_good_144.350
SRR6049665Rhizomagastrodiae_C368-T10_good_144.350
SRP279888GastroGastrodia elata tuber 8.42
JuvenJuvenile tuber5.59
Mother_GastroMother tuber of Gastrodia elata 17.54
Mother_JuvenMother tuber of Juvenile 9.38