Detail information of GWHGAAEX017155/evm.TU.scaffold_8.249


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17448.00E-75Histone H2B
nrgi|695043658|ref|XP_009409532.1|1.09E-85PREDICTED: histone H2B.11 [Musa acuminata subsp. malaccensis]
Swissprottr|O23629|H2B6_ARATH2.00E-75Histone H2B.6
trEMBLtr|M0THR3|M0THR3_MUSAM4.00E-86Histone H2B {ECO:0000256|RuleBase:RU000451}
TAIRAT3G459808.00E-75Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000499200419920650-
Transcript Sequence

Network for GWHGAAEX017155

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone91302.90E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0003677Molecular FunctionDNA binding
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.900
SRR2545915Juvenile tuber3.670
SRP108465SRR5643513five period of Gastrodia elata50.230
SRR5643514five period of Gastrodia elata78.620
SRR5643515five period of Gastrodia elata25.210
SRR5643524five period of Gastrodia elata52.820
SRR5643525five period of Gastrodia elata55.910
SRR5643528five period of Gastrodia elata31.950
SRR5643658five period of Gastrodia elata20.770
SRR5643659five period of Gastrodia elata15.210
SRR5643660five period of Gastrodia elata11.580
SRR5643661five period of Gastrodia elata11.560
SRR5643662five period of Gastrodia elata12.040
SRR5643663five period of Gastrodia elata15.230
SRR5643664five period of Gastrodia elata9.710
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.890
SRR6049655Rhizomagastrodiae_C368-T10_good_1103.680
SRR6049656Rhizomagastrodiae_C368-T07_good_139.430
SRR6049657Rhizomagastrodiae_C368-T07_good_133.930
SRR6049658Rhizomagastrodiae_C368-T04_good_16.500
SRR6049659Rhizomagastrodiae_C368-T04_good_17.060
SRR6049660Rhizomagastrodiae_C368-T01_good_113.180
SRR6049661Rhizomagastrodiae_C368-T04_good_110.250
SRR6049662Rhizomagastrodiae_C368-T01_good_117.040
SRR6049663Rhizomagastrodiae_C368-T01_good_17.850
SRR6049664Rhizomagastrodiae_C368-T10_good_174.230
SRR6049665Rhizomagastrodiae_C368-T10_good_174.230
SRP279888GastroGastrodia elata tuber 15.25
JuvenJuvenile tuber32.83
Mother_GastroMother tuber of Gastrodia elata 56.19
Mother_JuvenMother tuber of Juvenile 30.40