Detail information of GWHGAAEX017156/evm.TU.scaffold_8.250


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17564.00E-72Histone 2A
nrgi|567169605|ref|XP_006398714.1|3.46E-78hypothetical protein EUTSA_v10014920mg [Eutrema salsugineum]
Swissprottr|Q9M531|H2A_EUPES1.00E-74Histone H2A
trEMBLtr|V4LCQ3|V4LCQ3_EUTSA1.00E-78Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIRAT5G025604.00E-72histone H2A 12

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000499338519934905+
Transcript Sequence

Network for GWHGAAEX017156

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone20971.60E-12
PF16211.4Histone_H2A_C1001312.00E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0005634Cellular Componentnucleus
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms87.930
SRR2545915Juvenile tuber155.000
SRP108465SRR5643513five period of Gastrodia elata434.070
SRR5643514five period of Gastrodia elata608.520
SRR5643515five period of Gastrodia elata432.580
SRR5643524five period of Gastrodia elata487.810
SRR5643525five period of Gastrodia elata234.560
SRR5643528five period of Gastrodia elata190.240
SRR5643658five period of Gastrodia elata216.010
SRR5643659five period of Gastrodia elata110.730
SRR5643660five period of Gastrodia elata120.280
SRR5643661five period of Gastrodia elata129.000
SRR5643662five period of Gastrodia elata116.010
SRR5643663five period of Gastrodia elata133.510
SRR5643664five period of Gastrodia elata127.710
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1425.350
SRR6049655Rhizomagastrodiae_C368-T10_good_1277.860
SRR6049656Rhizomagastrodiae_C368-T07_good_1541.370
SRR6049657Rhizomagastrodiae_C368-T07_good_1419.890
SRR6049658Rhizomagastrodiae_C368-T04_good_1327.550
SRR6049659Rhizomagastrodiae_C368-T04_good_1291.870
SRR6049660Rhizomagastrodiae_C368-T01_good_1390.550
SRR6049661Rhizomagastrodiae_C368-T04_good_1403.710
SRR6049662Rhizomagastrodiae_C368-T01_good_1512.320
SRR6049663Rhizomagastrodiae_C368-T01_good_1303.540
SRR6049664Rhizomagastrodiae_C368-T10_good_1639.810
SRR6049665Rhizomagastrodiae_C368-T10_good_1639.810
SRP279888GastroGastrodia elata tuber 265.73
JuvenJuvenile tuber306.66
Mother_GastroMother tuber of Gastrodia elata 265.84
Mother_JuvenMother tuber of Juvenile 154.63