Detail information of GWHGAAEX017159/evm.TU.scaffold_8.253


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17445.00E-73Histone H2B
nrgi|672110380|ref|XP_008795023.1|4.87E-79PREDICTED: histone H2B.11-like [Phoenix dactylifera]
Swissprottr|O23629|H2B6_ARATH1.00E-73Histone H2B.6
trEMBLtr|M0THR3|M0THR3_MUSAM2.00E-75Histone H2B {ECO:0000256|RuleBase:RU000451}
TAIRAT3G459805.00E-73Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000041002175610022244+
Transcript Sequence

Network for GWHGAAEX017159

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone201386.30E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms523.090
SRR2545915Juvenile tuber790.950
SRP108465SRR5643513five period of Gastrodia elata998.190
SRR5643514five period of Gastrodia elata1209.350
SRR5643515five period of Gastrodia elata905.190
SRR5643524five period of Gastrodia elata882.710
SRR5643525five period of Gastrodia elata823.800
SRR5643528five period of Gastrodia elata500.620
SRR5643658five period of Gastrodia elata601.490
SRR5643659five period of Gastrodia elata566.750
SRR5643660five period of Gastrodia elata570.720
SRR5643661five period of Gastrodia elata639.840
SRR5643662five period of Gastrodia elata586.030
SRR5643663five period of Gastrodia elata573.770
SRR5643664five period of Gastrodia elata637.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11134.620
SRR6049655Rhizomagastrodiae_C368-T10_good_11173.600
SRR6049656Rhizomagastrodiae_C368-T07_good_11381.050
SRR6049657Rhizomagastrodiae_C368-T07_good_11204.410
SRR6049658Rhizomagastrodiae_C368-T04_good_1843.340
SRR6049659Rhizomagastrodiae_C368-T04_good_1842.820
SRR6049660Rhizomagastrodiae_C368-T01_good_11153.390
SRR6049661Rhizomagastrodiae_C368-T04_good_11112.350
SRR6049662Rhizomagastrodiae_C368-T01_good_11343.630
SRR6049663Rhizomagastrodiae_C368-T01_good_11009.800
SRR6049664Rhizomagastrodiae_C368-T10_good_11601.270
SRR6049665Rhizomagastrodiae_C368-T10_good_11601.270
SRP279888GastroGastrodia elata tuber 566.41
JuvenJuvenile tuber664.17
Mother_GastroMother tuber of Gastrodia elata 401.89
Mother_JuvenMother tuber of Juvenile 238.66