Detail information of GWHGAAEX017163/evm.TU.scaffold_8.260
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189183782|ref|YP_001937567.1| | 1.00E-24 | ankyrin repeat-containing protein 10_02 [Orientia tsutsugamushi str. Ikeda] |
| KOG | KOG0504 | 0 | FOG: Ankyrin repeat |
| nr | gi|672110259|ref|XP_008794360.1| | 0 | PREDICTED: ankyrin repeat-containing protein At5g02620-like [Phoenix dactylifera] |
| Swissprot | tr|Q6AWW5|Y5262_ARATH | 0 | Ankyrin repeat-containing protein At5g02620 |
| trEMBL | tr|M0TLW4|M0TLW4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P02120_001} |
| TAIR | AT1G07710 | 0 | Ankyrin repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 10140027 | 10155263 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017163
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12796.6 | Ank_2 | 106 | 166 | 9.90E-12 |
| PF12796.6 | Ank_2 | 177 | 235 | 1.80E-13 |
| PF13637.5 | Ank_4 | 248 | 300 | 5.40E-05 |
| PF13962.5 | PGG | 358 | 471 | 3.20E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.550 |
| SRR2545915 | Juvenile tuber | 27.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.760 |
| SRR5643514 | five period of Gastrodia elata | 30.270 | |
| SRR5643515 | five period of Gastrodia elata | 30.050 | |
| SRR5643524 | five period of Gastrodia elata | 42.230 | |
| SRR5643525 | five period of Gastrodia elata | 12.910 | |
| SRR5643528 | five period of Gastrodia elata | 10.390 | |
| SRR5643658 | five period of Gastrodia elata | 11.060 | |
| SRR5643659 | five period of Gastrodia elata | 22.320 | |
| SRR5643660 | five period of Gastrodia elata | 27.500 | |
| SRR5643661 | five period of Gastrodia elata | 29.880 | |
| SRR5643662 | five period of Gastrodia elata | 15.850 | |
| SRR5643663 | five period of Gastrodia elata | 17.720 | |
| SRR5643664 | five period of Gastrodia elata | 12.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.60 |
| Juven | Juvenile tuber | 15.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 57.65 | |
| Mother_Juven | Mother tuber of Juvenile | 31.24 |