Gene detail

Detail information of GWHGAAEX017165/evm.TU.scaffold_8.262

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672120701\|ref\|XP_008783627.1\|	0	PREDICTED: nucleoprotein TPR-like [Phoenix dactylifera]
trEMBL	tr\|M0U9E4\|M0U9E4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP15350_001}
TAIR	AT1G58210	1.00E-76	kinase interacting family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	10189679	10210868	+

Transcript Sequence
>GWHTAAEX017165 AGATAGAGAGAGAGAGAGGGGGGGAGGGGTGAAATGTTACAGAGAGCAGCCAACAACGCCTACTCTTGGTCGTGGGCAAGCAACATCCGGACCAAGCAATCCAAGTGGCTAGACAACAACCTCCAAGAAATGGAGGAGAGGGTGAAATCTATGATCAAGCTTATAGAAGTGGATGCCGATTCCTTCGCCAAAAAAGCGGAGCTATATTTTCAGAGGAGGCCGGAACTGATAAACTTTGTTGAAGAGACTTACAAAGCCTATAGAGCTTTGGCCGACCGGTATGATCGAATATCCGGAGATCTTCATAAGGCCAACCACACTATTGCCTCTGCCTTTCCTGATCAATTCCAGCTTGCTATGGAAGATGAAGAAGAAGATGGCTCCCCAAAGGCAATCACAGCTATTGATACAAACAAGCTTCTCAAGGCACAGCCGTTGATCAACTTGAGGAACAAAGGCAGAGATGCGTGTTCGGCTTTAAAGAAGCAGCATAAGAAAGTCAGCTCTCAACTCACGAAGGAGAGTGCTCAGAATGAAATCGACAGTCTCCAAAAAGAATTTCTTGTTCTCCAGACTGAGAAAGATTATGTCAAGAGCTCCTATGAGAGAAGCCTTACCAGGTTCTGGGAGATCGAGAGCCAGATCTCAGATTTACAAGATGAGATTTGCACCTTACAGGATGAATACAGTGTTAATTCTATTATCGAAGATAATGAAGCCCGGGCATTAATGGCGGTTACGGCATTTAAATCATGTGAGGAAAGCTTAGTTAGTTTGCAGCAGCAGCAGAAAAAATCAGGAGAGGAGGCGGATTTGGAATCTAAGAGAATTAGGGAAGTTAAAAGCAGGCTGAAGTCTCTCAAAGGTGAAAACTGCTCGCAAGAAGTAGAGAAAATTATTGATGATGAAGAGCATTTTCACCTCAAAAATGACGGGGTAGACTTGTATTCTGTATGTGCACAGGTGAAGCAGCATTTTCAGCTGAACTCCGACACATCAATTGTGAACCTTGTTGAGAAAATTGATGGACTTGTGGAGAAATTCATTAGCTTGGAGGTGAAGATTTCATCTCAAACAGCACAAATACTGACTCTGAGGCATGAGACTGACGTGCTTTATAAGTTCCTTAGAGGCCTGGAAGAAGATAAAGCTAATTCAATGATTGACTCTAACAACTTGAATGAGAGGCTCATGCTTGCAGAAGATGAATTTCATAGAGTTGAGGATCTTGAAAAAAATATCAGTCATGAGAAAGGGATCTTTCAAACTCATTTTTTAGAGGTTTGCAATAGCTTCAATGACATATCAGAGAAGCTACAATCAACCAGGCACAAGGTGAAGGATGATAACGCTCCTTTGAATCAGCAGATTGAGGCTGATTCAGCTGAGAAAAATGTGGATTTAGACAGGCAGAAAATGCTGCTATGTAAATATGCATCGATTCTCCAGAATTATAAAGACACAGAGAAGAGGCTCACTGAGATGGAGATGGCGTACCAAGAGTACCATTTCGAGATGATTGCACAGATTCAAGAGCTGAAAAGTGCAAATGCTGTCAAGGATCAAGAGATAAGATCCCTGAGGAGGAAATTGTTCTCACACTCTTCTTCCAAATCAGATTTTCCGACTGAAATTTCGGAAACTGAAAGAGAGATCTATCTATGTCAATTAGATCAGCAGCACTCCAGCTCGCCCATTGAGGAGAGATTCAGAGCTGAGCTTGACACCCTCCTGGATGAAAACCTCGACTTTTGGCTAAGATTCAGCACCTCATATCATCATATTCAGAAGTTTGAAGCATCATTCAAGGAGCTGCAAGCTCCAAAAAATTCATCAAAGGAGGAAACTGTGCCACTTGAAAAGAGACTGAGGGAGCTCCATACAGAGCTCCAAGTCTGGCTGGAACAAAATGGATTGCTTAAAGAAGAGCTTCAGTGCAGATTCACTGCCCTCAGCAATATCCAAGAAGAGATCACGAAAGCCTCAAGCGATGCTGTGGATGAGGACTCCAAGTTCAGGCCATTCCAAGCTGCTAAGTTCCAGGGTGAGCTGCTGAACATGCAGCAAGAGAACAACAAGGTTGCCATGGAGCTGCAAACTGGCTTGGATCATGTGAAGGGACTTCAGACTGAGGTTTCCCAGGCTTTGTCGAAGCTGAGGGAGAGCTTTGATCTCACGGTCTCGAATGAGTATCAGCAATACCAAAACTTCAGGCATTCTTCTACAAGGTCTAAGGTTCCACTCAGAACATTCTTGTTTGGGGAAAAAAGAAAGAAGCCTTCCATATTCTCATGCATGAGCCCAGCACTGCTCAGGCATCATCATAGTCAAATGAAGCATGGATTCCCTCCATGATGACCGTTTAGCTGCTTTGATTCTTCTTATTTCAACTTCTCTTTTAAATGATGGTTGGGTATATGGAAGTCCGGCCCTTGATTTTTAAGCGCCGTGCTGTGGGTGTGATGCATTTGAAAGAATGTGTGATTTTTAGTTGAGTATTACAGCCATGCCCGAAAGTAAGGATTTGATGAGGTAAACTTAAGTATCAAAAATTATTTGTCATGCACAGTTTAAAAATCATGATAGTCTTTTTTTTCTCTCCCGTTCATCAAAAACATGTTTCTTGTTAGTTTAGCTTGGAAAAACAACTTTCCAAGCAACATGTTTTGTCCATTGAAATTGTTTGTTTGTTTAAACCCTTCCATTAGGTTTGACTTTAAAAAATTAGCTTGTAAAACTATGATAATATTTCTTAATTGCTTAGAGCAACTTCCAA

Network for GWHGAAEX017165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07765.11	KIP1	11	84	3.30E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003779	Molecular Function	actin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.030
SRP064423	SRR2545915	Juvenile tuber	3.110
SRP108465	SRR5643513	five period of Gastrodia elata	7.020
	SRR5643514	five period of Gastrodia elata	7.620
	SRR5643515	five period of Gastrodia elata	6.320
	SRR5643524	five period of Gastrodia elata	7.480
	SRR5643525	five period of Gastrodia elata	5.140
	SRR5643528	five period of Gastrodia elata	4.310
	SRR5643658	five period of Gastrodia elata	4.970
	SRR5643659	five period of Gastrodia elata	5.840
	SRR5643660	five period of Gastrodia elata	4.980
	SRR5643661	five period of Gastrodia elata	5.330
	SRR5643662	five period of Gastrodia elata	4.410
	SRR5643663	five period of Gastrodia elata	5.070
	SRR5643664	five period of Gastrodia elata	5.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.070
SRP279888	Gastro	Gastrodia elata tuber	3.74
	Juven	Juvenile tuber	5.82
	Mother_Gastro	Mother tuber of Gastrodia elata	3.97
	Mother_Juven	Mother tuber of Juvenile	3.82