Detail information of GWHGAAEX017166/evm.TU.scaffold_8.264


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG23631.00E-95Protein subunit of nuclear ribonuclease P (RNase P)
nrgi|672120970|ref|XP_008783772.1|3.10E-136PREDICTED: uncharacterized protein LOC103702912 [Phoenix dactylifera]
trEMBLtr|M0TGC6|M0TGC6_MUSAM2.00E-114Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P10380_001}
TAIRAT5G599801.00E-95Polymerase/histidinol phosphatase-like

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000041021458210244492+
Transcript Sequence

Network for GWHGAAEX017166

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01876.15RNase_P_p3052524.10E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03539RPP1, RPP30 RNA transport map03013
Ribosome biogenesis in eukaryotesmap03008

Gene Ontology

GO term OntologyName
GO:0008033Biological ProcesstRNA processing
GO:0003824Molecular Functioncatalytic activity
GO:0004540Molecular Functionribonuclease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms38.520
SRR2545915Juvenile tuber32.480
SRP108465SRR5643513five period of Gastrodia elata17.200
SRR5643514five period of Gastrodia elata20.580
SRR5643515five period of Gastrodia elata17.970
SRR5643524five period of Gastrodia elata18.210
SRR5643525five period of Gastrodia elata13.560
SRR5643528five period of Gastrodia elata16.520
SRR5643658five period of Gastrodia elata16.250
SRR5643659five period of Gastrodia elata15.520
SRR5643660five period of Gastrodia elata17.360
SRR5643661five period of Gastrodia elata13.960
SRR5643662five period of Gastrodia elata16.360
SRR5643663five period of Gastrodia elata16.040
SRR5643664five period of Gastrodia elata15.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.220
SRR6049655Rhizomagastrodiae_C368-T10_good_121.440
SRR6049656Rhizomagastrodiae_C368-T07_good_120.620
SRR6049657Rhizomagastrodiae_C368-T07_good_131.660
SRR6049658Rhizomagastrodiae_C368-T04_good_132.160
SRR6049659Rhizomagastrodiae_C368-T04_good_136.390
SRR6049660Rhizomagastrodiae_C368-T01_good_131.910
SRR6049661Rhizomagastrodiae_C368-T04_good_132.430
SRR6049662Rhizomagastrodiae_C368-T01_good_121.750
SRR6049663Rhizomagastrodiae_C368-T01_good_126.020
SRR6049664Rhizomagastrodiae_C368-T10_good_120.790
SRR6049665Rhizomagastrodiae_C368-T10_good_120.790
SRP279888GastroGastrodia elata tuber 25.07
JuvenJuvenile tuber37.32
Mother_GastroMother tuber of Gastrodia elata 24.03
Mother_JuvenMother tuber of Juvenile 31.98