Detail information of GWHGAAEX017171/evm.TU.scaffold_8.269
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|32471474|ref|NP_864467.1| | 7.00E-25 | serine/threonine-protein kinase pknA [Rhodopirellula baltica SH 1] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|743890295|ref|XP_010911042.1| | 0 | PREDICTED: serine/threonine-protein kinase CDL1-like [Elaeis guineensis] |
| Swissprot | tr|Q0WRY5|CDL1_ARATH | 0 | Serine/threonine-protein kinase CDL1 {ECO:0000305} |
| trEMBL | tr|V5K779|V5K779_9ASTR | 0 | Serine/threonine-protein kinase PBS1 {ECO:0000313|EMBL:AGU91423.1} (Fragment) |
| TAIR | AT5G02800 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 10308804 | 10351687 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017171
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 81 | 349 | 1.60E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-VIIa-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.260 |
| SRR2545915 | Juvenile tuber | 13.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.140 |
| SRR5643514 | five period of Gastrodia elata | 25.640 | |
| SRR5643515 | five period of Gastrodia elata | 24.340 | |
| SRR5643524 | five period of Gastrodia elata | 25.940 | |
| SRR5643525 | five period of Gastrodia elata | 22.920 | |
| SRR5643528 | five period of Gastrodia elata | 28.720 | |
| SRR5643658 | five period of Gastrodia elata | 21.460 | |
| SRR5643659 | five period of Gastrodia elata | 14.540 | |
| SRR5643660 | five period of Gastrodia elata | 14.210 | |
| SRR5643661 | five period of Gastrodia elata | 15.400 | |
| SRR5643662 | five period of Gastrodia elata | 20.660 | |
| SRR5643663 | five period of Gastrodia elata | 15.100 | |
| SRR5643664 | five period of Gastrodia elata | 15.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.05 |
| Juven | Juvenile tuber | 21.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 46.58 | |
| Mother_Juven | Mother tuber of Juvenile | 36.63 |