Gene detail

Detail information of GWHGAAEX017173/evm.TU.scaffold_8.271

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743789753\|ref\|XP_010922987.1\|	9.06E-117	PREDICTED: uncharacterized protein LOC105046162 [Elaeis guineensis]
trEMBL	tr\|M0TR93\|M0TR93_MUSAM	1.00E-94	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P17400_001}
TAIR	AT3G11760	8.00E-77	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	10431956	10434958	-

Transcript Sequence
>GWHTAAEX017173 TCTTGAATGGATTTTCATTATTGTGATGAAAATATGTTTAAATTCACACAGCCAAATATAATACAGAAATTCAAGATACAACCACTAACCCACAAGACAAGGTCTTAACGAAAGTCACACTCTGCCGTATCAAACAGACTATCAAACATATATTGTATGTTTATTTTTTCCTGTCTTTCTTTGTTCGAGCAGAAGAACCGTGCTTTAAGACATATTTATAAAAGACTAGCATGCCACATCCAAAAAAAAAAATTTCAAATTCAGAACCAACAAATGATTCAAAAAAAAATTCATCCTTTTTTTTTCCAGTAAGAATCCCATATTTTCGACAAGTTTCAAAATTCTGAACTGCCTTCTCTTAGCTCTGCCTGGTTCCTCTCCTTCGATGGAGCTGAAGTTGTTCCTGGTGATCGAAAACATCGAGAATTTGCCAGAAAACATTCCTGACTGCAGCTTGATTGCAAAGGTAGAATGGAGGGGAAGCGAAAGGAAGGTGGGAATATTGGCAAAAAGCTGCAAAAAGAACTATACTTGCCAGCAGAGAGTTGAGGCAGATGGTAAAGTGAGCTGGAGTGAAGGATTTGGTCATGATTTCAGATTAAACAGAGAGGGAGCTGAGAGGTATGAGAGCTGGATCATTGCCCTGAAAATCATGGAAGCTCAAGAAAAATCAAGCGTTAAGATGAGAAAGGTTGGCAGAGCGAAGATGGATGTTGCTAAATTTATCCAAATCGAGAATGAGGAGAGCATCAAACTTCCAATCAGCTGCAGTATCAGAGGCCATATCGCAGAGACGATGCTTACGGTGAAACTGCAGATTAGCAAAACCGCGTCAAAAGACACCATTCTCATTCGTCCTGCGAGTCTATCCGCAACAAACTGGCTGTCAAAAAGCAAGCGTCTTTCGACCGAGGGCGGTGCGCTCCAAAAACAAAGATCCCTCAAAAAGGTGCTATCTTTTAAGACATCAGCACCAGAAAAGCAGCTCTGCATCCACTGCCTGGCTCCCTTCAAGAAGATCAAGGTGCGGCCGGAGGAAATACTGAAACCCCTGGCCTTAGAAATCGGCCACTGGCAAAAGAAGAAGCTTTTCAGCAGAGACGGAAGCCTTGAATTGGAGACGGACGTCTTCCTGGCATCCATCGACCAGCGCAGCAAAATAGCCGCTGGGGGCAGCGCCTGCACTGTCCTCGCAACCGTCATCGCCGAATGGCTCCACGCCCATCCCAACTCCCTACCTCTGCGCTACCAATTCGATCGGCTCATCCTCAGAGGATCCTCCAAATGGCGAATTCTCTGCCAAGACGAAAAGCACAAATCCAAGTTCGCCGACAAGCACTTCGACCTAGATACCGTTCTGGAGGCCAGCCTCGGCGTGTCTTTAAAGATCGATATCGAGAACTCCTTCGTGGGATTCTTTGGCGCTGAGGCGGTACCCGAAGCTCGTGAATGGCTGCAGGGGCAGATGTCATTCGATGCGATTTGGGGCAGGCTCATGGAGGATAGAATTTACATCATCAGTTGGAATGATCACTTCTTTGTTCTCAAAGTCGAGAGCGGCGTTATGTATCTGATTGACACGTTGGGGGAGAGACTAGCTGAGGGATGCAAGCAGGCTTATATTTTGAAGTTTGGGGCGGAGAGCGCGATCTACAGGCGGGGGGGAGATGGGAAGAAGAGGAGGTCCGATTCGGGGGATTTGCTGAGCCAAGGAATGGAATGCTGCAGGGAGTATATTAAGGGATTCCTCTCAGCTGTTCCGCTGAGGGAGTTTCGCAAGGATGTGGTTCGGAAAGGAAGGGTGAGGCATCAGCTTCTCTGTCGCTTCCTGCAAATTGACTTTTATTGCACCTCTAAGAAGAGTGATTGATGCTCAAAACCTGTGTGAAAAGTTTTTCCTTGTTTTTTGTTTTAAAAAAGGTATTTTTTTATTTTTGGCAACTCATCTGAGTATTTTTTCTCCTTCCTCACTTATTGAGCTCCGGGCAGGCAACCAAAAGCTGGTTGTTCTTGATATAAAAAAGTTTCAATTTTGTGAATGAAGTTATATTAGAATGTTAATTCCTATTAATTTATT

Network for GWHGAAEX017173

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.410
SRP064423	SRR2545915	Juvenile tuber	3.100
SRP108465	SRR5643513	five period of Gastrodia elata	8.230
	SRR5643514	five period of Gastrodia elata	10.080
	SRR5643515	five period of Gastrodia elata	10.530
	SRR5643524	five period of Gastrodia elata	7.460
	SRR5643525	five period of Gastrodia elata	7.300
	SRR5643528	five period of Gastrodia elata	6.320
	SRR5643658	five period of Gastrodia elata	3.950
	SRR5643659	five period of Gastrodia elata	3.590
	SRR5643660	five period of Gastrodia elata	2.050
	SRR5643661	five period of Gastrodia elata	2.330
	SRR5643662	five period of Gastrodia elata	3.990
	SRR5643663	five period of Gastrodia elata	3.270
	SRR5643664	five period of Gastrodia elata	7.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.330
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.690
SRP279888	Gastro	Gastrodia elata tuber	5.85
	Juven	Juvenile tuber	3.73
	Mother_Gastro	Mother tuber of Gastrodia elata	16.12
	Mother_Juven	Mother tuber of Juvenile	4.32