Detail information of GWHGAAEX017180/evm.TU.scaffold_8.280
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0869 | 2.00E-67 | CCAAT-binding factor, subunit A (HAP3) |
| nr | gi|672120808|ref|XP_008783683.1| | 5.49E-85 | PREDICTED: nuclear transcription factor Y subunit B-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P25209|NFYB_MAIZE | 3.00E-71 | Nuclear transcription factor Y subunit B |
| trEMBL | tr|G7L4J2|G7L4J2_MEDTR | 7.00E-78 | Nuclear transcription factor Y subunit B {ECO:0000313|EMBL:AES79326.2} (Fragment) |
| TAIR | AT3G53340 | 2.00E-67 | nuclear factor Y, subunit B10 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 10667978 | 10697415 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017180
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00808.22 | CBFD_NFYB_HMF | 26 | 90 | 1.30E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08065 | NFYB | Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.810 |
| SRR2545915 | Juvenile tuber | 51.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 53.630 |
| SRR5643514 | five period of Gastrodia elata | 47.640 | |
| SRR5643515 | five period of Gastrodia elata | 70.130 | |
| SRR5643524 | five period of Gastrodia elata | 53.640 | |
| SRR5643525 | five period of Gastrodia elata | 74.220 | |
| SRR5643528 | five period of Gastrodia elata | 85.940 | |
| SRR5643658 | five period of Gastrodia elata | 71.220 | |
| SRR5643659 | five period of Gastrodia elata | 61.260 | |
| SRR5643660 | five period of Gastrodia elata | 55.760 | |
| SRR5643661 | five period of Gastrodia elata | 61.040 | |
| SRR5643662 | five period of Gastrodia elata | 74.580 | |
| SRR5643663 | five period of Gastrodia elata | 63.270 | |
| SRR5643664 | five period of Gastrodia elata | 54.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 46.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 51.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 39.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 52.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 52.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 78.27 |
| Juven | Juvenile tuber | 80.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 120.02 | |
| Mother_Juven | Mother tuber of Juvenile | 157.46 |