Detail information of GWHGAAEX017182/evm.TU.scaffold_8.282


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34571.00E-31Sec61 protein translocation complex, beta subunit
nrgi|731392577|ref|XP_010651144.1|1.25E-38PREDICTED: protein transport protein Sec61 subunit beta [Vitis vinifera]
Swissprottr|P38389|SC61B_ARATH5.00E-19Protein transport protein Sec61 subunit beta
trEMBLtr|V7AH75|V7AH75_PHAVU7.00E-39Uncharacterized protein {ECO:0000313|EMBL:ESW04188.1}
TAIRAT5G604601.00E-31Preprotein translocase Sec, Sec61-beta subunit protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000041074062410741788+
Transcript Sequence

Network for GWHGAAEX017182

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03911.15Sec61_beta57962.70E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09481SEC61B, SBH2 Protein export map03060
Protein processing in endoplasmic reticulummap04141
Phagosomemap04145

Gene Ontology

GO term OntologyName
GO:0006886Biological Processintracellular protein transport
GO:0005784Cellular ComponentSec61 translocon complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms118.610
SRR2545915Juvenile tuber164.730
SRP108465SRR5643513five period of Gastrodia elata178.210
SRR5643514five period of Gastrodia elata153.720
SRR5643515five period of Gastrodia elata165.590
SRR5643524five period of Gastrodia elata172.890
SRR5643525five period of Gastrodia elata126.980
SRR5643528five period of Gastrodia elata136.750
SRR5643658five period of Gastrodia elata113.050
SRR5643659five period of Gastrodia elata229.260
SRR5643660five period of Gastrodia elata212.660
SRR5643661five period of Gastrodia elata250.000
SRR5643662five period of Gastrodia elata225.660
SRR5643663five period of Gastrodia elata228.780
SRR5643664five period of Gastrodia elata216.370
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1154.820
SRR6049655Rhizomagastrodiae_C368-T10_good_1375.020
SRR6049656Rhizomagastrodiae_C368-T07_good_1157.660
SRR6049657Rhizomagastrodiae_C368-T07_good_1156.840
SRR6049658Rhizomagastrodiae_C368-T04_good_1129.840
SRR6049659Rhizomagastrodiae_C368-T04_good_1120.380
SRR6049660Rhizomagastrodiae_C368-T01_good_1119.610
SRR6049661Rhizomagastrodiae_C368-T04_good_1126.810
SRR6049662Rhizomagastrodiae_C368-T01_good_1124.700
SRR6049663Rhizomagastrodiae_C368-T01_good_1128.580
SRR6049664Rhizomagastrodiae_C368-T10_good_1194.600
SRR6049665Rhizomagastrodiae_C368-T10_good_1194.600
SRP279888GastroGastrodia elata tuber 161.29
JuvenJuvenile tuber166.93
Mother_GastroMother tuber of Gastrodia elata 118.80
Mother_JuvenMother tuber of Juvenile 154.72