Gene detail

Detail information of GWHGAAEX017189/evm.TU.scaffold_8.290

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743853476\|ref\|XP_010940665.1\|	0	PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|F4I171\|MD15A_ARATH	8.00E-160	Mediator of RNA polymerase II transcription subunit 15a
trEMBL	tr\|V4SUA9\|V4SUA9_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR40736.1}
TAIR	AT1G15780	3.00E-159	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	11166810	11213603	+

Transcript Sequence
>GWHTAAEX017189 ATGGCAATTCCCTTGGAGAACAACAATTGGCGGTCTGCTCAGGGTGAACCCTCCTCCATGGAAGCCCCTTCCTCCGATTGGCGCTCCGGGCTGCAGCCCGAAGCGAGGCAAAGGATCGTAAATAAAATAATGGAAACTCTAAGGAGGCATCTTCCTGTACCTGTTCCTGAGGGAATTACTGAGCTCAAGAAAATTGCTGTGCGATTTGAAGAGAAGATTTATACTGCGGCTCTCAGTCAGAATGATTATCTACGAAAGATATCTATGAAAATGCTCTCTATGGAGACTAAAACTCAACAGAATCCTTCAATGAACCCTCAGCCTGGCGTCAATCAAATTTCTGCAGACACAGGATCTATAGCCGTACCATCACAAGTGAACAATCAGGTACAATCATTGCCACAGATTCCAATGATTAGTCAGCCTGCAGGAAGGCAGCAATTTTTAGCTCAAAATCTGCAAAATAACACTCCTGTGTCCATGCAAGGTTCTTCTAGCCTTTCTGCTCCGCCTTCTATTTCAGGGCTTAGTCAATCAACCTTATCAAACTTTAGTCATTTACAAAATATACCGGAGCTATCACACGGTTCTGTAAATAATTCTTTAGCACAGGGAACAGCTACAGATATTTATGCCAATGCACAAAGGCAAATTCATGGAAGGCAACATCAACAAACAATCCTTTCTCAACAACAATCACAGCAATCACAGAATCAACTCATCTACCAAAATCAGCTTCAACCACAGTTATTAAAGCAGAAAATGCACAATAACTCACTTTTGCTGCCATCTATGCAGCAGCAGCAGCAACAATCTTTGTTACAAGCAAATCAACTGCAACCTTCTCAGCAGCCTATGATGCAAATGTCTTCTGGCCAGTCCTCTATGCAGCAGTCACCTGTGACTACCATTCAATCCGCTTCCCAGACTACACTTCAACAGAATCAATTGAACTCAATTCAACAGCCTGTATCATCTTTACTTCCCCAACATGTGCAAGCAATTGCTAGGCAATCACAGCAACCGCTGTCTTCTCTCCATCAGCAACCTTCACTGCAGCAACAATCAGTTAATATTCATCAGCAATCAAACTCGCAAACCCAGCAGCAACAGCAACAGTTGATAGGGCAGCAAGCAAACATGTCGAACATGTCAAGCATTCAACAAAATCAATTGCTAGGACAACAAAATAATATTGTTGACATGAAACAGCAGCAACAAAGATTGCCTGTTCAGCAAAATAATCTTACCAACATGCAACAGTCCCAACAATTACTCAATCAGCGAGCAATGTCTTTACGTCAGCAGCAGTTAGGCCAACAGGCTAACATGCAAGGCCTCCAGCACCAGCAACCACCCCCATCCCAGCAACAACACCATCAGCAACAGCAGTTACTTGGTTCGCTTCAGAACATCTCAAACATGCAGTCACATCAACGTTCAGTGCAGCTTCTTCAGGAGTCTAAAAACATGTCACAGACACAACAGCAGTTGCAGCAGCCATCTATGTCATTGCTGCAAACCCAAGGTCAACAAGCACATCATCTGTCATCACAACAGCAACTGATGTCTCAGTTTCAGTCTCAGCCAGGGCAGCTGCAACAGCCATTGACAATGCAACAGCAACCAAATGCCATGCAAAGGTTTCAAGCTTCAGGTGCTTTGCTTCAGCCTCAGAGTGTAATGGAGCAGCAGAAGCAAATCATGCAGTCACAAAGAGGAATTTCTGAAGTTCCATCTACATCAATGGATTCAACAGCTCAGACAGGACATAATGGCACAGATTGGCAAGAGGAAGTTTATCAAAAAATACAAGCCATGAAAGAAGCACATTTTACAGAGCTTCAGGAATTCCATCTTAAGATGTCCCAGAGACTTCAGCAGAATGAAATGATCCCTCATGCTAAGCAGTCTGAAAATTTTGAGAAATTGAAAAACTTCAAAATCATTTTGGATCGCATGATAGCTTTTCTCCAGATTTCTAAAAGTAATATTTCAATTACCTTGAAAGAAAAACTTCCTATGTATGAGAAGCAAATAATTAGCTTGTTAGCTTCACACAAAAAGCAAAAACTAATGGTGCAACAGCAGGAAAATCATGGAAACCAGGTGCACCAAATGAATATGCCAGGCTCTATTACAACTATGCAGTCGGCAGTAACCTCCAGTATGCTACATGGGTCCATGGCATTACCAAATTTACCTGCTCCTGCAACACAGCAAAATATAGCAAATTCAGTTCAATCATCTTCTGATTTGGATCAAGTTCAAGTGAATTCTTTTGGTTCACTGCAACAAGGTTTGATTAGCTCAATTCAGCAAAGTGGGGTTGGCTCTTTGCAAAATTCAGTTAGTGCTGCTCAACAAGCCAACGTCAACAATATGTCACAAAGCTCTATGAGTGCGCTACAACCTAATCCGCTTCCAATGCAAAACTCTAATGTTCTACAGCACCAACATCTGAAACAACAACAGCAGGAACATATGATGCAAAATCAGCAATTAAAGCAACGCCAAATTCAACAACAATTGCTTCATCAGCAACAAAGACAGCAATTGCTGCAGCCACAGCAGCAAATGCAACAGCAACAACAAAAGCAGCAACAAGCTTCACCGCTGCCAGTTCACCAGATGCAACAAGTTCATCCTATGAATGAACTAAATGAAATAAAGGCTCGACAAGGATCTGGCGTTAATCCAGGATTGTACCCACAGTCCTATGCAGGAGCCCAGCGCAATTATCATCAGCAACTTAAACCTGGTACTTCTTTTCCAATTTCTTCTCCTCAGAACTTACAGCCATCATCCCCTCAGATTTCTCACCATTCTTCACCTCAAATAGATCAGCATGCTTTGTTGCCTACTCTTTCAAAAGCTAGTATGCAATCAGCAGGTTTACCCTTCGTTGTACCATCTCCTTCCACCCCTGTTGCCCCATCTCCCATACCAGGGGACTCTGAGAAACTGGCTTCTGCTACTGTGTCACTCCCAACCCCAGGACAAACTGCCCATCAACAAATTGCTGGTGTGCCAACTCAAACCCAATCAGTTGCTGTTGCAACACCCATATCAGCTTCCCCTTTACTGGCAGAGTTTACGACCCAGGAAGGAAACCAGTCTAATGCATCTTTAAGAACAAATTCTTCTGAGCGTCCATTTGAACGGTTAATTAAGGCGGTTCAATCTTTGTCACCGAAAACTCTTAGCTCTGCGGTTAGTGATATTAGTTCTGTTGTAAGCATGGTTGACCGGATTGCTGGCTCAGCACCGGGCAATGGTTCAAGGGCTGCTGTTGGCGAAGATTTGGTAGGGATGACAAAGTGTCGTCTGCAAGCAAGGAATTTTATTACACAAGACGGTGGTGCCAGCACAAAGAAAATGAAGCGGCACACAAGTGCTATGCCTCTAAATAATGCTTCATCAGCAGGCAGTGTAAATGATAACTTTATGAAATTTGGCAGCCTTGAGTCATCCGAATTTGAATCCACAGCAACTTCTCATGTCAAAAGGCAAAAATTTGAGGTGAACCATCCTCTGCATGAGGAGATCAGGCAAATAAACCAACAGCTTATTGACACAGTGGTTAGTATATGCGATGATGATTCTGCTTCTGTTACCACTGCATCTGAAGGTCGAAAAGGGACAATCGTTAAGTGCTCTTTCAGTGCAGTGGCCTTCAGTCCCAGTTTAAAAGCTCATTTTTCCTCAATGCGTATGTCGCCGATAGAGCCTTTGAGATTACTGGTTCCTGTGGATTATCCAAAATGCTCTCCTATACTTCTTGACAAGCTTCCAGTTGAACCAAGCAAGGAGTTTGAAGACCTCTCTACAAAGGCAAAATCGAGGTTTGGCATTTCTCTTCGTGACCTTTCACAGCCAATGTCGCTTGGAGAAATGGCAGGAACATGGGATGCTTGTGCACGTGCGGTGGTTGTGGAGTATGCTCGGCAGACTGGTGGGGGTAGCCTTAGCTCAACTTATGGTGCCTGGGAAAATTGTGTTGGAGCTTGA

Network for GWHGAAEX017189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16987.4	KIX_2	25	104	1.40E-36

Protein Sequence

>GWHPAAEX017189
MAIPLENNNWRSAQGEPSSMEAPSSDWRSGLQPEARQRIVNKIMETLRRHLPVPVPEGITELKKIAVRFEEKIYTAALSQNDYLRKISMKMLSMETKTQQNPSMNPQPGVNQISADTGSIAVPSQVNNQVQSLPQIPMISQPAGRQQFLAQNLQNNTPVSMQGSSSLSAPPSISGLSQSTLSNFSHLQNIPELSHGSVNNSLAQGTATDIYANAQRQIHGRQHQQTILSQQQSQQSQNQLIYQNQLQPQLLKQKMHNNSLLLPSMQQQQQQSLLQANQLQPSQQPMMQMSSGQSSMQQSPVTTIQSASQTTLQQNQLNSIQQPVSSLLPQHVQAIARQSQQPLSSLHQQPSLQQQSVNIHQQSNSQTQQQQQQLIGQQANMSNMSSIQQNQLLGQQNNIVDMKQQQQRLPVQQNNLTNMQQSQQLLNQRAMSLRQQQLGQQANMQGLQHQQPPPSQQQHHQQQQLLGSLQNISNMQSHQRSVQLLQESKNMSQTQQQLQQPSMSLLQTQGQQAHHLSSQQQLMSQFQSQPGQLQQPLTMQQQPNAMQRFQASGALLQPQSVMEQQKQIMQSQRGISEVPSTSMDSTAQTGHNGTDWQEEVYQKIQAMKEAHFTELQEFHLKMSQRLQQNEMIPHAKQSENFEKLKNFKIILDRMIAFLQISKSNISITLKEKLPMYEKQIISLLASHKKQKLMVQQQENHGNQVHQMNMPGSITTMQSAVTSSMLHGSMALPNLPAPATQQNIANSVQSSSDLDQVQVNSFGSLQQGLISSIQQSGVGSLQNSVSAAQQANVNNMSQSSMSALQPNPLPMQNSNVLQHQHLKQQQQEHMMQNQQLKQRQIQQQLLHQQQRQQLLQPQQQMQQQQQKQQQASPLPVHQMQQVHPMNELNEIKARQGSGVNPGLYPQSYAGAQRNYHQQLKPGTSFPISSPQNLQPSSPQISHHSSPQIDQHALLPTLSKASMQSAGLPFVVPSPSTPVAPSPIPGDSEKLASATVSLPTPGQTAHQQIAGVPTQTQSVAVATPISASPLLAEFTTQEGNQSNASLRTNSSERPFERLIKAVQSLSPKTLSSAVSDISSVVSMVDRIAGSAPGNGSRAAVGEDLVGMTKCRLQARNFITQDGGASTKKMKRHTSAMPLNNASSAGSVNDNFMKFGSLESSEFESTATSHVKRQKFEVNHPLHEEIRQINQQLIDTVVSICDDDSASVTTASEGRKGTIVKCSFSAVAFSPSLKAHFSSMRMSPIEPLRLLVPVDYPKCSPILLDKLPVEPSKEFEDLSTKAKSRFGISLRDLSQPMSLGEMAGTWDACARAVVVEYARQTGGGSLSSTYGAWENCVGA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003712	Molecular Function	transcription cofactor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	80.830
SRP064423	SRR2545915	Juvenile tuber	56.530
SRP108465	SRR5643513	five period of Gastrodia elata	24.620
	SRR5643514	five period of Gastrodia elata	25.820
	SRR5643515	five period of Gastrodia elata	22.440
	SRR5643524	five period of Gastrodia elata	24.420
	SRR5643525	five period of Gastrodia elata	17.930
	SRR5643528	five period of Gastrodia elata	19.190
	SRR5643658	five period of Gastrodia elata	27.570
	SRR5643659	five period of Gastrodia elata	22.150
	SRR5643660	five period of Gastrodia elata	23.770
	SRR5643661	five period of Gastrodia elata	18.000
	SRR5643662	five period of Gastrodia elata	18.100
	SRR5643663	five period of Gastrodia elata	19.720
	SRR5643664	five period of Gastrodia elata	19.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	61.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	74.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	92.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	69.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.820
SRP279888	Gastro	Gastrodia elata tuber	31.27
	Juven	Juvenile tuber	28.07
	Mother_Gastro	Mother tuber of Gastrodia elata	27.39
	Mother_Juven	Mother tuber of Juvenile	21.89