Gene detail

Detail information of GWHGAAEX017190/evm.TU.scaffold_8.291

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743853476\|ref\|XP_010940665.1\|	0	PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|F4I171\|MD15A_ARATH	3.00E-161	Mediator of RNA polymerase II transcription subunit 15a
trEMBL	tr\|A0A061G942\|A0A061G942_THECC	0	Uncharacterized protein {ECO:0000313\|EMBL:EOY25953.1}
TAIR	AT1G15780	1.00E-160	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000004	11239658	11282443	+

Transcript Sequence
>GWHTAAEX017190 ATGGAGAACACTAATTGGCGGTCTGCTCAGGGCGAACCCTCCTCCATGGAAATCCCTTCTTCCGATTGGCGCTCCGGGCTGCAGCCCGAAGCGAGGCAAAGGATCGTAAATAAGATAATGGAAACTCTAAGGAGGCATCTTCCTGTACCTGTTCCTGAAGGAATGACCGAGCTCAAAAAAATTGCTGTTCGATTTGAAGAGAAGATTTATACTGCCGCGCTCAGTCAGACTGATTATCTACGAAAGATATCTTTGAAAATGCTCTCTATGGAGACTAAAACTCAACATAATACTTCAATAAACCCTCAGCCTGGCGTCAATCAAAATTCTGCAGACTCAGGCGTGCAATCATGCATTACAGGATCTATAGGCGTACCATCACAAGTGAATAATCAGGTACAATCACTGCCACAGATTCCAATGATTAGTCAACCTGCAGGAAGGCTACAATTTTTAACTCAAAATCTGCAAAACAACACTCCTGTGTCCATGCATGGTTCTTCTAGCCTTTCTGCTTCGCCTTCTATTGCAGGGCTTAGTCAATCAACCTTATCAAACTTTGTTCATACATCTAATTTACAAAATATACCGGAGATGTCACACAGTTCTGTAAATAATTCTTTAGCACAGGGAACAGAAACAGATATTTATGCCAATGCACAAAGGCAAATTCAAGGAAGGCAACATCAACAAACAATCCTTTCTCAACAACAATCACAGCAATCACAAAATCCACTCATCTACCAAAATCAGCTTCAACCGCAGTTATCAAAGCAGAAAATGCAGAATAACTCACTTTTGCTGCCATCTATGCAGCAGCAGCAGCAGCAACAATCTTTGTTACAAGCAAATCAACTCCAACCTTCTCAGCAGCCTATGATGCAAATGTCTTCTGGCCAGTCCTCTATTCAGCAGTCACCAGTGACTACCATTCAATCCACTTCCCAGCTTACACTTCAACAGAATCATTTGAACTCAATTCAACAGCCTGTATCATCTTTACTCCCCCAACATGTGCAAGGAATTGCTAGGCAATCACAGCAATCACTGTCTTCTCTCCACCAGCAACATTCACTGCAGCAACAGTCAGTTAATATTCACCAGCAATCGAATTTGCAAACCCAGCAGCAACAACAACAGTTGATAGGGCAGCAAGCAAACATGTCAAACATGTCAAACGTTCAACAAAATCATTTGCTAGGCCATCAAAGTAATATCGTTGACATGAAACAGCAGCAACAAAGATTGCCTGCCCAGCAAAATAATCTTGCCAACATGCAACAGTCTCAACAGTTACTCAATCAGCGAGCATTGTCTTTACGTCAGCAGCAGTTAAGTCGACAGGTTAACATGCAAGGTCTCCAGCAGCAGCAACAACCCCAATCCCAACAACAACACCAGCAACAACAGCAGTTACTTGGTTCGCTTCACAGCATCTCAAATATGCAGTCACATCAACGTTCGGTGCAGCTTCTTCAGGAGACTAAAAACATGTCACAGACACAACAGCAGTTGCAGCAGCCATCTATGTCATTGCTGCAATTGCAAGGTCAACAAGCACATCATTTGCCATCACAGCAGCTGATGTCTCAATTTCAGTCTCAGCCAGGGCAGCTGCAACAGCCATTGGCAATGCAACAACAACCAAATGCCATGCAAAGGTTTCAAGCTTCAGGTGCTTTGCTTCAGCCTCAGAGTACAATGGAGCAGCAAAAGCAAATTATGCAGTCACAAAGAGGGATTTCCGAAGTCCCATCTACATCAATGGATTCAACAGCTCAGACTGGACATAATGGCACAGATTGGCAAGAGGAAGTTTATCAAAAAATACAAGCCATGAAAGAAGCACATTTTACAGAACTACAGGAATTCCATCTGAAGATGTCCCAGAAACTTCATCAGAATGAAATGATCCCTCATGCTAAGCAGTCTGAAAATTTTGAGAAATTGAAAAACTTCAAAATCATTTTGGATCGCATGATAGCTTTTCTCCAGATTTCTAAAAGTAGTATTTCAATTACTTTGAAAGAAAAACTTCCTATGTATGAGAAGCAAATAATTAGCCTGTTAGCTTCACACAAAAAGCAAAAATTAATGGTGCAACAGCAGGAAAATCATGGAAGCCAGGTGCACCAAATGAATATGCCAGGCTCTATTACAACTATGCAGTCGGCAGTAACCTCCAGTATGCAACATGGGTCCATGGCTTTACCAAATTTACCTGCTCCTACAACACAGCAAAATATAACAAATTCAGCTCAATCGTCATCTGATTTGGATCAAGTTCAAGTGAATTCTTTTGGTTCATTGCAACAAGGTTTGATTAGCTCAGTGCAGCACAGTGGGGTTGGCTCTTTGCATAATTCAGTTAGTGCTGCTCAACAAGCTAACCTCAACAATCTGTCACAAAGCTCTATGAGTCCACTGCAGCCTAATCCAGTTCCAATGCAAAACTCTAATGTTCTACAGCAACATCTGAAACAACAACAGCAGGAACATATGATGCAAAATCAGCAATTAAAGCAGCAGTTGCAGCAACACCAAATTCAACAGCAATTGCTCCATCAACAACAAAGACAGCAGCTGCTGCAGCCACAGCAGCAAATGCAACAGCAGCTACATCAACAACAAAAGCAGCAACAAGCTTCATCGCTGCCAGTGCACCAGATGCAACAACTTCATCCTATGAATGAACTAAATGAACTAAATGCTCGACAAGGATCTGGCATTAAGCCAGGAATATACCCACAATCATATGCAGGAGCCCAGCGCTATTATCATCAACAACTTAAATCTGGTGCTTCTTTTCCCGTTTCATCTCCTCAGAATTTGCAGCCATCATCCCCTCAGATTTCTCACCATTCTTCACCTCAAATAGATCAGCATGCTTTGTTGCCTACACTTTCAAAGACTAGTATGCAATCAGCAAGTTCGCCCTTTGTTGTACAATCTCCTTCCACCCCAATTGCCCCATCTCCTATACCAGGGGACTCTGAGAAACTGGCATCTGCTACTGTGTCACTCCCAACCACAGGACAAATTGTCCATCAACAAATTGCTGGTGTGCCCCCTCAAACCCAATCAGTTGCTGTTGCAACACCTATATCAGCTTCTCCTTTACTGGCAGAGTTTATGACCCAGGAAGGAAACCCGTCTAATGCATCTTTAAGAACGAGTTCTGACCGTCCATTTGAGCGCTTAATTAAGGCGGTTCAATCTTTGTCACCGAAAGCTCTTAGCTCTGCTGTTAGTGATATTAGTTCTGTTGTAAGCATGATTGACCGGATTGCTGGCTCAGCACCGGGCAATGGTTCAAGGGCTGCTGTTGGCGATGATTTGGTAGCAATGACAAAGTGCCGTCTGCAAGCTAGGAATTTTATGACACAAGATGGTGGTGCCAGCACAAAGAAAATGAAGCGGCACACAAGTGCTATGCCACTAAATAATGTTTCATCAGCAGGCAGTGTAAATGACAACTTTATGAAATTTGGCAGCCTTGATTCATCTGAACTTGAATCCACTGCAACTTCTCATGTCAAAAGGCAGAAACTAGAGGTGAACCATCCTCTGCATGAGGAGATTAGGCAAATAAACCAGCAGCTTATTGACACGGTGGTTAGTATATGCGATGATGAATCTGCTTCTGTTACCACTGCATCTGAAGGTCGAGAAGGGACAATTGTTAAATGCTCTTTCAGTGCAGTGGCCTTCAGTCCCAGTTTAAAAGCTCATTTTGCCTCAATGCATATGTCGCCAATAGAGCCTTTGAGATTGCTGGTTCCTGTGGAGTATCCAAAATGCTCTCCTATACTTCTTGACAAGCTACCAATTGAACCAAGCAAGGAGTTTGAAGACCTCTCTGCAAAGGCAAAGTCGAGGTTCAGCATTTCCCTTCGTGACCTTTCGCAGCCAATGTCGCTTGGAGAAATGGCAGGAACATGGGATGCTTGTGCACGTATGGTGGTTGTGGAGTATGCTCGGCAGACCGGTGGGGGTACCTTTAGCTCAACTTATGGTGCCTGGGAAAATTGTGTCGGGGCTTGATCTGGTACACCATTGTAATTCTATTTATATTTCTTTCAAAAGATGCACGAGTGAAATCTGTTCGACTTATAAAATAATATATGCTAAAATTGAACTTTTTAGTTAATCTTTCTTTTTTTTGTCTTGAGTTCTTCATATATTCAGTTGAGTGGTAGGATCTTGTTCATCTGCTTGTAATAATCATGTTCTGTTTTTGCTTATTGTAAGTATGATTAATGTATGATGTCAAATTAAATACTTCTCAATGTTATTTTTTT

Network for GWHGAAEX017190

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16987.4	KIX_2	21	99	1.10E-35

Protein Sequence

>GWHPAAEX017190
MENTNWRSAQGEPSSMEIPSSDWRSGLQPEARQRIVNKIMETLRRHLPVPVPEGMTELKKIAVRFEEKIYTAALSQTDYLRKISLKMLSMETKTQHNTSINPQPGVNQNSADSGVQSCITGSIGVPSQVNNQVQSLPQIPMISQPAGRLQFLTQNLQNNTPVSMHGSSSLSASPSIAGLSQSTLSNFVHTSNLQNIPEMSHSSVNNSLAQGTETDIYANAQRQIQGRQHQQTILSQQQSQQSQNPLIYQNQLQPQLSKQKMQNNSLLLPSMQQQQQQQSLLQANQLQPSQQPMMQMSSGQSSIQQSPVTTIQSTSQLTLQQNHLNSIQQPVSSLLPQHVQGIARQSQQSLSSLHQQHSLQQQSVNIHQQSNLQTQQQQQQLIGQQANMSNMSNVQQNHLLGHQSNIVDMKQQQQRLPAQQNNLANMQQSQQLLNQRALSLRQQQLSRQVNMQGLQQQQQPQSQQQHQQQQQLLGSLHSISNMQSHQRSVQLLQETKNMSQTQQQLQQPSMSLLQLQGQQAHHLPSQQLMSQFQSQPGQLQQPLAMQQQPNAMQRFQASGALLQPQSTMEQQKQIMQSQRGISEVPSTSMDSTAQTGHNGTDWQEEVYQKIQAMKEAHFTELQEFHLKMSQKLHQNEMIPHAKQSENFEKLKNFKIILDRMIAFLQISKSSISITLKEKLPMYEKQIISLLASHKKQKLMVQQQENHGSQVHQMNMPGSITTMQSAVTSSMQHGSMALPNLPAPTTQQNITNSAQSSSDLDQVQVNSFGSLQQGLISSVQHSGVGSLHNSVSAAQQANLNNLSQSSMSPLQPNPVPMQNSNVLQQHLKQQQQEHMMQNQQLKQQLQQHQIQQQLLHQQQRQQLLQPQQQMQQQLHQQQKQQQASSLPVHQMQQLHPMNELNELNARQGSGIKPGIYPQSYAGAQRYYHQQLKSGASFPVSSPQNLQPSSPQISHHSSPQIDQHALLPTLSKTSMQSASSPFVVQSPSTPIAPSPIPGDSEKLASATVSLPTTGQIVHQQIAGVPPQTQSVAVATPISASPLLAEFMTQEGNPSNASLRTSSDRPFERLIKAVQSLSPKALSSAVSDISSVVSMIDRIAGSAPGNGSRAAVGDDLVAMTKCRLQARNFMTQDGGASTKKMKRHTSAMPLNNVSSAGSVNDNFMKFGSLDSSELESTATSHVKRQKLEVNHPLHEEIRQINQQLIDTVVSICDDESASVTTASEGREGTIVKCSFSAVAFSPSLKAHFASMHMSPIEPLRLLVPVEYPKCSPILLDKLPIEPSKEFEDLSAKAKSRFSISLRDLSQPMSLGEMAGTWDACARMVVVEYARQTGGGTFSSTYGAWENCVGA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003712	Molecular Function	transcription cofactor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	63.590
SRP064423	SRR2545915	Juvenile tuber	56.810
SRP108465	SRR5643513	five period of Gastrodia elata	21.580
	SRR5643514	five period of Gastrodia elata	19.170
	SRR5643515	five period of Gastrodia elata	22.210
	SRR5643524	five period of Gastrodia elata	18.230
	SRR5643525	five period of Gastrodia elata	20.270
	SRR5643528	five period of Gastrodia elata	14.850
	SRR5643658	five period of Gastrodia elata	24.770
	SRR5643659	five period of Gastrodia elata	23.120
	SRR5643660	five period of Gastrodia elata	27.460
	SRR5643661	five period of Gastrodia elata	22.710
	SRR5643662	five period of Gastrodia elata	25.190
	SRR5643663	five period of Gastrodia elata	27.540
	SRR5643664	five period of Gastrodia elata	32.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	57.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.690
SRP279888	Gastro	Gastrodia elata tuber	41.57
	Juven	Juvenile tuber	34.51
	Mother_Gastro	Mother tuber of Gastrodia elata	26.22
	Mother_Juven	Mother tuber of Juvenile	30.33