Detail information of GWHGAAEX017208/evm.TU.scaffold_80.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|347758387|ref|YP_004865949.1|3.00E-10ssDNA-binding protein [Micavibrio aeruginosavorus ARL-13]
KOGKOG16531.00E-74Single-stranded DNA-binding protein
nrgi|672160497|ref|XP_008800031.1|3.00E-95PREDICTED: single-stranded DNA-binding protein, mitochondrial [Phoenix dactylifera]
Swissprottr|Q84J78|SSBP_ARATH2.00E-80Single-stranded DNA-binding protein, mitochondrial (Precursor)
trEMBLtr|M0TS40|M0TS40_MUSAM7.00E-89Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P20370_001}
TAIRAT4G110601.00E-74mitochondrially targeted single-stranded DNA binding protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000843870346995-
Transcript Sequence

Network for GWHGAAEX017208

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00436.24SSB731769.70E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003697Molecular Functionsingle-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.240
SRR2545915Juvenile tuber23.360
SRP108465SRR5643513five period of Gastrodia elata21.810
SRR5643514five period of Gastrodia elata25.240
SRR5643515five period of Gastrodia elata17.500
SRR5643524five period of Gastrodia elata20.790
SRR5643525five period of Gastrodia elata3.600
SRR5643528five period of Gastrodia elata2.920
SRR5643658five period of Gastrodia elata1.370
SRR5643659five period of Gastrodia elata21.350
SRR5643660five period of Gastrodia elata21.220
SRR5643661five period of Gastrodia elata17.270
SRR5643662five period of Gastrodia elata16.220
SRR5643663five period of Gastrodia elata14.520
SRR5643664five period of Gastrodia elata17.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.430
SRR6049655Rhizomagastrodiae_C368-T10_good_116.660
SRR6049656Rhizomagastrodiae_C368-T07_good_128.130
SRR6049657Rhizomagastrodiae_C368-T07_good_122.290
SRR6049658Rhizomagastrodiae_C368-T04_good_124.420
SRR6049659Rhizomagastrodiae_C368-T04_good_121.850
SRR6049660Rhizomagastrodiae_C368-T01_good_129.900
SRR6049661Rhizomagastrodiae_C368-T04_good_127.100
SRR6049662Rhizomagastrodiae_C368-T01_good_141.480
SRR6049663Rhizomagastrodiae_C368-T01_good_141.350
SRR6049664Rhizomagastrodiae_C368-T10_good_130.570
SRR6049665Rhizomagastrodiae_C368-T10_good_130.570
SRP279888GastroGastrodia elata tuber 33.37
JuvenJuvenile tuber41.50
Mother_GastroMother tuber of Gastrodia elata 5.52
Mother_JuvenMother tuber of Juvenile 14.09