Detail information of GWHGAAEX017209/evm.TU.scaffold_80.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428317844|ref|YP_007115726.1|5.00E-12serine/threonine protein kinase with TPR repeats [Oscillatoria nigro-viridis PCC 7112]
KOGKOG11550Anaphase-promoting complex (APC), Cdc23 subunit
nrgi|695070794|ref|XP_009382442.1|0PREDICTED: anaphase-promoting complex subunit 8 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9STS3|CDC23_ARATH0Anaphase-promoting complex subunit 8
trEMBLtr|M0RPE5|M0RPE5_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P04650_001}
TAIRAT3G481500anaphase-promoting complex subunit 8

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000845696769302-
Transcript Sequence

Network for GWHGAAEX017209

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04049.12ANAPC871664.00E-37
PF13181.5TPR_83483784.30E-05
PF13414.5TPR_113884281.50E-08
PF13176.5TPR_74875190.0021
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03355APC8, CDC23 Ubiquitin mediated proteolysis map04120
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName
GO:0030071Biological Processregulation of mitotic metaphase/anaphase transition
GO:0005515Molecular Functionprotein binding
GO:0005680Cellular Componentanaphase-promoting complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.510
SRR2545915Juvenile tuber7.430
SRP108465SRR5643513five period of Gastrodia elata8.120
SRR5643514five period of Gastrodia elata6.870
SRR5643515five period of Gastrodia elata6.560
SRR5643524five period of Gastrodia elata5.820
SRR5643525five period of Gastrodia elata8.760
SRR5643528five period of Gastrodia elata7.320
SRR5643658five period of Gastrodia elata6.310
SRR5643659five period of Gastrodia elata7.170
SRR5643660five period of Gastrodia elata7.490
SRR5643661five period of Gastrodia elata7.310
SRR5643662five period of Gastrodia elata7.330
SRR5643663five period of Gastrodia elata8.100
SRR5643664five period of Gastrodia elata7.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.950
SRR6049655Rhizomagastrodiae_C368-T10_good_110.660
SRR6049656Rhizomagastrodiae_C368-T07_good_110.380
SRR6049657Rhizomagastrodiae_C368-T07_good_114.480
SRR6049658Rhizomagastrodiae_C368-T04_good_112.620
SRR6049659Rhizomagastrodiae_C368-T04_good_114.060
SRR6049660Rhizomagastrodiae_C368-T01_good_112.800
SRR6049661Rhizomagastrodiae_C368-T04_good_110.940
SRR6049662Rhizomagastrodiae_C368-T01_good_19.330
SRR6049663Rhizomagastrodiae_C368-T01_good_110.510
SRR6049664Rhizomagastrodiae_C368-T10_good_110.230
SRR6049665Rhizomagastrodiae_C368-T10_good_110.230
SRP279888GastroGastrodia elata tuber 8.70
JuvenJuvenile tuber13.73
Mother_GastroMother tuber of Gastrodia elata 11.63
Mother_JuvenMother tuber of Juvenile 13.81