Gene detail

Detail information of GWHGAAEX017210/evm.TU.scaffold_80.5

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672119893\|ref\|XP_008783198.1\|	2.42E-154	PREDICTED: uncharacterized protein LOC103702511 isoform X3 [Phoenix dactylifera]
Swissprot	tr\|Q94A79\|DMS3_ARATH	9.00E-98	Protein DEFECTIVE IN MERISTEM SILENCING 3
trEMBL	tr\|M5X579\|M5X579_PRUPE	3.00E-134	Uncharacterized protein {ECO:0000313\|EMBL:EMJ20646.1} (Fragment)
TAIR	AT3G49250	1.00E-83	defective in meristem silencing 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	70268	111875	-

Transcript Sequence
>GWHTAAEX017210 AAGTAGCAAGCCCTAATAGTGGGATCTGCGCCTATTTTCATCCAATAACACATTGAGCTATTTGTTAAGCATAATAACAAAGATCAGAAAATTTTTATCACACTAATTAAAATTTCTTAAATAAAAAATACGACATCATCCATTTTATTGAGGTGCGATTTTTAGCCTTCATATATCGTTTGATTTAGCGGGTGGAAGAAAATTCGTGCCGGTTAGGCCCGCCCTAATTGAATTCCAAACAAAATCAAGGGCGCGGAGATCAGCAGTACAGGCCAGAACAATCCAAGGGAGCGGTCGGCAGGGAAGCTTCACTTTCGGAGGAGAGGAGCTCACTTGTTCTAGCTTCGCCGCCGGCGAGTTTGCGGGTTGCACCGGATTGGATTGTAAGTTGGTTTTTTTTCCCATCAATCAGTGGAAACCAGATGTCTGCAATATCCCAGTCTAATGCTCACGGTGCAGCTCCAAACTTTGAATTACTCAAGACTTTAATTCAGAAAGAGCAGGATGATTTGCAGAAAGTGACACAAGAAGTCAAACATCATGAAGACAATCTGAAATTTCTCAGGTCTCATGTGAACACTCTCCATGAGTCCATTCTTCATTTGGAAGGTGAGCTGAAGGAATGCCATTCATCTGTTGTGGCTGTGGAAGTAAATGGCAATATTACTTTTGCAAACACTGAGAAGCAGACACTCGATCATATACAGCAACTAGATGTAACAGCTGCTGGCATAATTTGTCAACTAAAAGATCAGCATGGCACAATGGCATCTACGCTTCGGTGCACCAAGGATATAGTAGGAATTGTTGCTACACTTGGAAAAGTAAAAGATGCGGAACTTAGCAGAATTTTGTCCGAGTACTTGGGTTTGGACACCATGTTGGCTATTGTTTGCAAGACACTTGAAGGCGTTCAAGCCCTTGAACGGTATGAGAAAGATGGCTGTATTGACCGTAATTATGGTCTCCATGGAATTGCGCCAACAATTGGAAGGACAGTGAAAGGTAGATTTCATGTTATTTGCCTTCAAAACATGAGGCCATTTGTTGGTGAATTTCTTTCTAATGACCCACAAAAGAAGCTTGCTTTAATTAATCCAAAGCTACCTAATGGGAAGCTACCACCTGGGTTCTTAGGCTTTGCTGTGAACATGATCAATGTGGATGATATACACTTATCTTGTGTCACTATTGATGGCCATGGACTAAGGGAGACTTTATTTTTTAACTTATTTTCTCGTCTACAAGTGTACAAAAATAGGGCTGATATGCTATGTGCTCAGCCTTTCATAACCAATGGTGCAGTTTCCTTGGATGGAGGGATTATTAAAGGCAGCGGTTTATTTTGTCTTGGAGACAGGAATGAGGTTGAGATAAAATTTCCTGTGGCCGAAGCAAATCCAAATATTCCCCGGGAAGTATTTGAACTTGAGCAGCAGATCAAGTTTATGGAATGGAAGAAGGAGATGCTGTCTTCTGACATACAGAGAGAGGAAGCGTTGTTAAATAATGCAAAATGCTTGCTAAAAGCCAAGTCGGACGGATACAGAATGCTCATCAACGAGGAACTGCTGAACAAAGGACGGAGCCCATCATCCCCTATGCCTATCAACACAGGATTTCTGCTGCATGACTCGAGAAGGCAGTGAAGTTATTATTATTGATTAATCGATCATCTCTTTTGTTGTTGTATTGAGAGCTTCTCCTCATTATTGCTGAAGAAAGGTTCGCTGTCAAGTGTAAATGAATTGTGCTGAAATCTCTGCTATTCTTTCTGTAGAGAGAGCAATTGTGTATTAAAAAATTAGGGTTTTTGGTTTTCTCCGTTCTGCAACTCTTGATGCCTCTCTTTGAAGATGAAAGTGGTGGATGTAAATAATCCTCTCCTCTTATTTGGCCAAATATTTTATGGAATACAAAATTTATCAGCATTTGCTGGACAAATATTTTTATGTACTTTTATATATATA

Network for GWHGAAEX017210

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	52.560
SRP064423	SRR2545915	Juvenile tuber	55.830
SRP108465	SRR5643513	five period of Gastrodia elata	44.310
	SRR5643514	five period of Gastrodia elata	42.210
	SRR5643515	five period of Gastrodia elata	33.660
	SRR5643524	five period of Gastrodia elata	38.700
	SRR5643525	five period of Gastrodia elata	50.650
	SRR5643528	five period of Gastrodia elata	42.510
	SRR5643658	five period of Gastrodia elata	53.410
	SRR5643659	five period of Gastrodia elata	32.280
	SRR5643660	five period of Gastrodia elata	32.680
	SRR5643661	five period of Gastrodia elata	32.320
	SRR5643662	five period of Gastrodia elata	35.250
	SRR5643663	five period of Gastrodia elata	35.300
	SRR5643664	five period of Gastrodia elata	36.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.700
SRP279888	Gastro	Gastrodia elata tuber	34.22
	Juven	Juvenile tuber	41.28
	Mother_Gastro	Mother tuber of Gastrodia elata	33.82
	Mother_Juven	Mother tuber of Juvenile	32.49