Detail information of GWHGAAEX017213/evm.TU.scaffold_80.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|152992145|ref|YP_001357866.1|4.00E-1593-phosphoshikimate 1-carboxyvinyltransferase [Sulfurovum sp. NBC37-1]
KOGKOG06920Pentafunctional AROM protein
nrgi|743831347|ref|XP_010934664.1|0PREDICTED: 3-phosphoshikimate 1-carboxyvinyltransferase 2-like [Elaeis guineensis]
Swissprottr|P05466|AROA_ARATH03-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (Precursor)
trEMBLtr|M0U232|M0U232_MUSAM03-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531}
TAIRAT2G453000RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000084185991196285-
Transcript Sequence

Network for GWHGAAEX017213

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00275.19EPSP_synthase815112.70E-145
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00800aroA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0009073Biological Processaromatic amino acid family biosynthetic process
GO:0016765Molecular Functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0003866Molecular Function3-phosphoshikimate 1-carboxyvinyltransferase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.030
SRR2545915Juvenile tuber28.120
SRP108465SRR5643513five period of Gastrodia elata65.580
SRR5643514five period of Gastrodia elata31.310
SRR5643515five period of Gastrodia elata105.190
SRR5643524five period of Gastrodia elata54.830
SRR5643525five period of Gastrodia elata67.220
SRR5643528five period of Gastrodia elata141.480
SRR5643658five period of Gastrodia elata94.660
SRR5643659five period of Gastrodia elata49.960
SRR5643660five period of Gastrodia elata42.840
SRR5643661five period of Gastrodia elata49.660
SRR5643662five period of Gastrodia elata66.800
SRR5643663five period of Gastrodia elata62.600
SRR5643664five period of Gastrodia elata31.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.230
SRR6049655Rhizomagastrodiae_C368-T10_good_119.510
SRR6049656Rhizomagastrodiae_C368-T07_good_132.010
SRR6049657Rhizomagastrodiae_C368-T07_good_123.980
SRR6049658Rhizomagastrodiae_C368-T04_good_121.870
SRR6049659Rhizomagastrodiae_C368-T04_good_125.620
SRR6049660Rhizomagastrodiae_C368-T01_good_127.000
SRR6049661Rhizomagastrodiae_C368-T04_good_127.150
SRR6049662Rhizomagastrodiae_C368-T01_good_139.780
SRR6049663Rhizomagastrodiae_C368-T01_good_131.370
SRR6049664Rhizomagastrodiae_C368-T10_good_134.400
SRR6049665Rhizomagastrodiae_C368-T10_good_134.400
SRP279888GastroGastrodia elata tuber 51.34
JuvenJuvenile tuber22.94
Mother_GastroMother tuber of Gastrodia elata 89.88
Mother_JuvenMother tuber of Juvenile 98.75