Detail information of GWHGAAEX017215/evm.TU.scaffold_80.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1985 | 0 | Vesicle coat complex COPII, subunit SEC24/subunit SFB2 |
| nr | gi|743806763|ref|XP_010927800.1| | 0 | PREDICTED: protein transport protein sec24-like [Elaeis guineensis] |
| Swissprot | tr|Q9SFU0|SC24A_ARATH | 5.00E-20 | Protein transport protein Sec24-like At3g07100 |
| trEMBL | tr|D7TCU0|D7TCU0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI28313.3} |
| TAIR | AT2G27460 | 0 | sec23/sec24 transport family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 211471 | 231462 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017215
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04810.14 | zf-Sec23_Sec24 | 51 | 82 | 1.30E-05 |
| PF04811.14 | Sec23_trunk | 117 | 369 | 1.40E-27 |
| PF04815.14 | Sec23_helical | 494 | 605 | 2.10E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0006888 | Biological Process | ER to Golgi vesicle-mediated transport |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0030127 | Cellular Component | COPII vesicle coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 47.800 |
| SRR2545915 | Juvenile tuber | 33.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.010 |
| SRR5643514 | five period of Gastrodia elata | 29.780 | |
| SRR5643515 | five period of Gastrodia elata | 30.150 | |
| SRR5643524 | five period of Gastrodia elata | 30.950 | |
| SRR5643525 | five period of Gastrodia elata | 27.860 | |
| SRR5643528 | five period of Gastrodia elata | 38.260 | |
| SRR5643658 | five period of Gastrodia elata | 26.710 | |
| SRR5643659 | five period of Gastrodia elata | 29.680 | |
| SRR5643660 | five period of Gastrodia elata | 33.540 | |
| SRR5643661 | five period of Gastrodia elata | 29.330 | |
| SRR5643662 | five period of Gastrodia elata | 31.150 | |
| SRR5643663 | five period of Gastrodia elata | 29.480 | |
| SRR5643664 | five period of Gastrodia elata | 32.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 43.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.72 |
| Juven | Juvenile tuber | 44.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.63 | |
| Mother_Juven | Mother tuber of Juvenile | 47.27 |