Detail information of GWHGAAEX017223/evm.TU.scaffold_80.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-151 | FOG: PPR repeat |
| nr | gi|743866062|ref|XP_010904986.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9M8M3|PP136_ARATH | 2.00E-151 | Pentatricopeptide repeat-containing protein At1g80550, mitochondrial (Precursor) |
| trEMBL | tr|A0A061GFZ8|A0A061GFZ8_THECC | 4.00E-164 | Pentatricopeptide repeat superfamily protein isoform 1 {ECO:0000313|EMBL:EOY25969.1} |
| TAIR | AT1G80550 | 6.00E-151 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 319244 | 321219 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017223
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 176 | 202 | 1 |
| PF13041.5 | PPR_2 | 206 | 252 | 2.70E-08 |
| PF13041.5 | PPR_2 | 276 | 321 | 2.00E-12 |
| PF01535.19 | PPR | 382 | 411 | 0.012 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.010 |
| SRR2545915 | Juvenile tuber | 6.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.480 |
| SRR5643514 | five period of Gastrodia elata | 2.200 | |
| SRR5643515 | five period of Gastrodia elata | 2.120 | |
| SRR5643524 | five period of Gastrodia elata | 2.220 | |
| SRR5643525 | five period of Gastrodia elata | 1.340 | |
| SRR5643528 | five period of Gastrodia elata | 0.770 | |
| SRR5643658 | five period of Gastrodia elata | 1.610 | |
| SRR5643659 | five period of Gastrodia elata | 2.030 | |
| SRR5643660 | five period of Gastrodia elata | 2.450 | |
| SRR5643661 | five period of Gastrodia elata | 2.610 | |
| SRR5643662 | five period of Gastrodia elata | 2.520 | |
| SRR5643663 | five period of Gastrodia elata | 2.040 | |
| SRR5643664 | five period of Gastrodia elata | 2.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.59 |
| Juven | Juvenile tuber | 3.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.15 | |
| Mother_Juven | Mother tuber of Juvenile | 1.36 |