Gene detail

Detail information of GWHGAAEX017224/evm.TU.scaffold_80.19

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|92118848\|ref\|YP_578577.1\|	isovaleryl-CoA dehydrogenase [Nitrobacter hamburgensis X14]
KOG	KOG0141	Isovaleryl-CoA dehydrogenase
nr	gi\|743842500\|ref\|XP_010937822.1\|	PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q75IM9\|IVD_ORYSJ	Isovaleryl-CoA dehydrogenase, mitochondrial (Precursor)
trEMBL	tr\|I1HML2\|I1HML2_BRADI	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI2G38100.1}
TAIR	AT3G45300	isovaleryl-CoA-dehydrogenase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	333441	407846	+

Transcript Sequence
>GWHTAAEX017224 CTTTGTTACCTTTGAGCTAAAAATATTTTTAGTTTGATAGTTTATCCTTTCCACATCTGAAATCTGAACAAAAGTGCTCCCTGCGGCTCTCACTCATCCCCCCTGCGAGTTGGAGATGAAGCGTGTTATTGCCGCCAGATGCGCGGCTGCCTTTGTCCGGCAGCCGAAGAACCGTGCAGCATTTTTCTCCACATCTCTTTTATTCGATGACACTCAGAAGCAGTTTAAAGAGAGCGTTCATCAATTTGCGCAAGAAAATATAGCTCCCCATGCAGCAAAGTTGGATGCGACTAATCAAGTTCCAAAGGATGTTAACCTGTGGAAACTTATGGGAGATTTCAATCTTCATGGCATCACAGCACCAGAGGAATATGGGGGTCTTGGTCTTGGTTATCTTTACCACTGCATAGCTATGGAAGAAATCAGTCGAGCTTCTGGATCTGTTGGCCTATCCTATGGTGCTCATTCAAATCTTTGTATCAATCAGTTGGTTCGAAATGGAAGTCCTGCACAGAAGAAAAAGTACTTGCCAAAGTTGATCAGTGGGGAGCATGTGGGAGCATTGGCAATGAGTGAACCAAATGCTGGCTCTGATGTTGTTAGCATGAAATGCAAAGCTGATCGTGTTGATGGTGGCTACATCTTAAATGGAAACAAAATGTGGTGTACAAATGGACCGACTGCTCAGACATTGGTAGTTTATGCAAAAACAGACATTAATGCTGGATCAAAAGGAATAACTGCATTTATCATTGAGAAAGATATGCTGGGCTTTAGTACTGCTCAGAAATTGGACAAACTTGGTATGCGAGGGAGTGATACATGTGAACTTGTTTTTGAGAACTGTTTAGTGCCTCAAGAAAATGTTCTTGGACAAGAAGGAAAAGGAGTGTACGTTTTGATGTCAGGACTAGATTTAGAGAGGCTTGTTTTGTCTGCCGGACCTCTGGGTATCATGCAGGCATGCCTAGATGTTGTTCTGCCCTATATTCGTGAAAGAGAGCAATTTGGGCGTCCAATAGGTGAATTCCAGTTTATTCAGGGAAAAGTGGCTGACATGTATACAGCGTTGCAATCTTCAAGAGCTTTCATGTATTCTGTTGCTCGGGAATGTGACAATGGAAAAATTAACCGAAAGGATTGTGCGGGGGTTATTCTTTTTGCCGCTGAAAAAGCTACCCAAGTTGCTCTCCAGGCAATTCAGTGTCTTGGTGGCAATGGGTATGTAAATGAATACCCGACAGGTCGTCTTCTCAGGGATGCCAAACTATACGAGATTGGCGCCGGCACAAGTGAGATCCGTAGAATGATTATTGGCCGCGAACTCTTTAATGAAAGTTAAGTTTTCCACAGTTATTATTTTACTTTTTGCTTTAGATCTTTGAAAAATAAATAAAAAGTATATATAGTGGTCATGTATATCATCCTTGTATTATTAGTTATATTGATTATACTTTGCATTCAGCAGTTCCTCTGCTTGTCAGATGAATTTTTTTTTGTAACATGAAATTCAATGCGGTGCATCTAAAAAACTTCCAAATAATACTGAATTGTTGTACTCATGTGTATTTTACCTCATTCCATGAATAATGAACTTTTCACAAGAATCACCTTTTTCATTACAGTTATCATTGTTTGTTTCTTTTTTTTGCACCTACATGCAAGCTTATTCATAGGTTTTTC

Network for GWHGAAEX017224

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02771.15	Acyl-CoA_dh_N	32	145	5.10E-36
PF02770.18	Acyl-CoA_dh_M	149	244	1.90E-24
PF00441.23	Acyl-CoA_dh_1	256	404	2.40E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00253	IVD, ivd	Metabolic pathways	map01100
K00253	IVD, ivd	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660	Molecular Function	flavin adenine dinucleotide binding
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.570
SRP064423	SRR2545915	Juvenile tuber	65.670
SRP108465	SRR5643513	five period of Gastrodia elata	69.460
	SRR5643514	five period of Gastrodia elata	79.710
	SRR5643515	five period of Gastrodia elata	72.220
	SRR5643524	five period of Gastrodia elata	83.610
	SRR5643525	five period of Gastrodia elata	63.250
	SRR5643528	five period of Gastrodia elata	77.920
	SRR5643658	five period of Gastrodia elata	72.280
	SRR5643659	five period of Gastrodia elata	59.820
	SRR5643660	five period of Gastrodia elata	62.670
	SRR5643661	five period of Gastrodia elata	58.190
	SRR5643662	five period of Gastrodia elata	61.440
	SRR5643663	five period of Gastrodia elata	64.870
	SRR5643664	five period of Gastrodia elata	61.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	62.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	69.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	59.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	65.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	78.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	78.720
SRP279888	Gastro	Gastrodia elata tuber	69.70
	Juven	Juvenile tuber	59.51
	Mother_Gastro	Mother tuber of Gastrodia elata	57.26
	Mother_Juven	Mother tuber of Juvenile	53.08