Detail information of GWHGAAEX017225/evm.TU.scaffold_80.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336117058|ref|YP_004571825.1| | 2.00E-26 | serine/threonine protein kinase [Microlunatus phosphovorus NM-1] |
| nr | gi|672131034|ref|XP_008789069.1| | 0 | PREDICTED: L-type lectin-domain containing receptor kinase VIII.1-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LYX1|LRK82_ARATH | 0 | L-type lectin-domain containing receptor kinase VIII.2 (Precursor) |
| trEMBL | tr|W9S586|W9S586_9ROSA | 0 | L-type lectin-domain containing receptor kinase VIII.1 {ECO:0000313|EMBL:EXC16248.1} |
| TAIR | AT5G03140 | 0 | Concanavalin A-like lectin protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 413310 | 415818 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017225
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00139.18 | Lectin_legB | 25 | 258 | 4.30E-54 |
| PF00069.24 | Pkinase | 344 | 550 | 9.10E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_L-LEC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.130 |
| SRR2545915 | Juvenile tuber | 6.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.980 |
| SRR5643514 | five period of Gastrodia elata | 8.260 | |
| SRR5643515 | five period of Gastrodia elata | 7.510 | |
| SRR5643524 | five period of Gastrodia elata | 6.980 | |
| SRR5643525 | five period of Gastrodia elata | 10.570 | |
| SRR5643528 | five period of Gastrodia elata | 7.100 | |
| SRR5643658 | five period of Gastrodia elata | 12.100 | |
| SRR5643659 | five period of Gastrodia elata | 4.890 | |
| SRR5643660 | five period of Gastrodia elata | 4.310 | |
| SRR5643661 | five period of Gastrodia elata | 6.560 | |
| SRR5643662 | five period of Gastrodia elata | 6.770 | |
| SRR5643663 | five period of Gastrodia elata | 5.100 | |
| SRR5643664 | five period of Gastrodia elata | 4.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.65 |
| Juven | Juvenile tuber | 8.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.52 | |
| Mother_Juven | Mother tuber of Juvenile | 10.32 |