Detail information of GWHGAAEX017226/evm.TU.scaffold_80.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307154171|ref|YP_003889555.1| | 4.00E-66 | RluA family pseudouridine synthase [Cyanothece sp. PCC 7822] |
| KOG | KOG1919 | 5.00E-118 | RNA pseudouridylate synthases |
| nr | gi|695075352|ref|XP_009384912.1| | 9.23E-160 | PREDICTED: RNA pseudouridine synthase 5 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0DST9|PUS5_ORYSJ | 1.00E-151 | RNA pseudouridine synthase 5 |
| trEMBL | tr|M0RV47|M0RV47_MUSAM | 8.00E-160 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P24670_001} |
| TAIR | AT3G52260 | 5.00E-118 | Pseudouridine synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 417043 | 557924 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017226
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00849.21 | PseudoU_synth_2 | 318 | 499 | 1.20E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009451 | Biological Process | RNA modification |
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0002161 | Molecular Function | aminoacyl-tRNA editing activity |
| GO:0009982 | Molecular Function | pseudouridine synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.010 |
| SRR2545915 | Juvenile tuber | 39.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.500 |
| SRR5643514 | five period of Gastrodia elata | 15.420 | |
| SRR5643515 | five period of Gastrodia elata | 17.390 | |
| SRR5643524 | five period of Gastrodia elata | 16.590 | |
| SRR5643525 | five period of Gastrodia elata | 23.750 | |
| SRR5643528 | five period of Gastrodia elata | 27.020 | |
| SRR5643658 | five period of Gastrodia elata | 28.600 | |
| SRR5643659 | five period of Gastrodia elata | 25.110 | |
| SRR5643660 | five period of Gastrodia elata | 23.460 | |
| SRR5643661 | five period of Gastrodia elata | 22.520 | |
| SRR5643662 | five period of Gastrodia elata | 29.350 | |
| SRR5643663 | five period of Gastrodia elata | 26.990 | |
| SRR5643664 | five period of Gastrodia elata | 28.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.28 |
| Juven | Juvenile tuber | 21.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.81 | |
| Mother_Juven | Mother tuber of Juvenile | 21.90 |