Detail information of GWHGAAEX017229/evm.TU.scaffold_80.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|347522783|ref|YP_004780353.1| | 0 | translation elongation factor EF-1 subunit alpha [Pyrolobus fumarii 1A] |
| KOG | KOG0052 | 0 | Translation elongation factor EF-1 alpha/Tu |
| nr | gi|743843595|ref|XP_011026991.1| | 0 | PREDICTED: elongation factor 1-alpha isoform X1 [Populus euphratica] |
| Swissprot | tr|O49169|EF1A_MANES | 0 | Elongation factor 1-alpha |
| trEMBL | tr|S8CGI7|S8CGI7_9LAMI | 0 | Elongation factor 1-alpha {ECO:0000256|RuleBase:RU004060} (Fragment) |
| TAIR | AT5G60390 | 0 | GTP binding Elongation factor Tu family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 611696 | 615893 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017229
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00009.26 | GTP_EFTU | 6 | 221 | 1.90E-53 |
| PF03144.24 | GTP_EFTU_D2 | 248 | 313 | 3.80E-15 |
| PF03143.16 | GTP_EFTU_D3 | 322 | 429 | 1.30E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03231 | EEF1A | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006414 | Biological Process | translational elongation |
| GO:0003746 | Molecular Function | translation elongation factor activity |
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 103.550 |
| SRR2545915 | Juvenile tuber | 191.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 334.600 |
| SRR5643514 | five period of Gastrodia elata | 277.430 | |
| SRR5643515 | five period of Gastrodia elata | 329.340 | |
| SRR5643524 | five period of Gastrodia elata | 289.630 | |
| SRR5643525 | five period of Gastrodia elata | 150.330 | |
| SRR5643528 | five period of Gastrodia elata | 147.970 | |
| SRR5643658 | five period of Gastrodia elata | 93.890 | |
| SRR5643659 | five period of Gastrodia elata | 333.810 | |
| SRR5643660 | five period of Gastrodia elata | 291.490 | |
| SRR5643661 | five period of Gastrodia elata | 366.680 | |
| SRR5643662 | five period of Gastrodia elata | 330.610 | |
| SRR5643663 | five period of Gastrodia elata | 320.370 | |
| SRR5643664 | five period of Gastrodia elata | 325.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 363.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 279.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 425.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 293.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 260.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 240.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 382.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 364.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 443.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 481.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 415.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 415.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 287.31 |
| Juven | Juvenile tuber | 226.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 133.64 | |
| Mother_Juven | Mother tuber of Juvenile | 158.39 |