Detail information of GWHGAAEX017232/evm.TU.scaffold_80.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41976.00E-15FOG: PPR repeat
nrgi|695049856|ref|XP_009412879.1|1.08E-23PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SJZ3|PP169_ARATH2.00E-15Pentatricopeptide repeat-containing protein At2g22410, mitochondrial (Precursor)
trEMBLtr|M0TNY9|M0TNY9_MUSAM5.00E-24Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}
TAIRAT2G224106.00E-15SLOW GROWTH 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000084641067641357+
Transcript Sequence

Network for GWHGAAEX017232

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.040
SRR2545915Juvenile tuber2.790
SRP108465SRR5643513five period of Gastrodia elata2.980
SRR5643514five period of Gastrodia elata8.860
SRR5643515five period of Gastrodia elata2.740
SRR5643524five period of Gastrodia elata11.170
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata12.190
SRR5643660five period of Gastrodia elata10.680
SRR5643661five period of Gastrodia elata11.280
SRR5643662five period of Gastrodia elata9.650
SRR5643663five period of Gastrodia elata6.670
SRR5643664five period of Gastrodia elata14.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.440
SRR6049655Rhizomagastrodiae_C368-T10_good_117.710
SRR6049656Rhizomagastrodiae_C368-T07_good_17.430
SRR6049657Rhizomagastrodiae_C368-T07_good_16.490
SRR6049658Rhizomagastrodiae_C368-T04_good_12.350
SRR6049659Rhizomagastrodiae_C368-T04_good_18.330
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_110.700
SRR6049662Rhizomagastrodiae_C368-T01_good_14.040
SRR6049663Rhizomagastrodiae_C368-T01_good_13.950
SRR6049664Rhizomagastrodiae_C368-T10_good_111.680
SRR6049665Rhizomagastrodiae_C368-T10_good_111.680
SRP279888GastroGastrodia elata tuber 19.47
JuvenJuvenile tuber17.59
Mother_GastroMother tuber of Gastrodia elata 8.73
Mother_JuvenMother tuber of Juvenile 7.02