Detail information of GWHGAAEX017233/evm.TU.scaffold_80.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41975.00E-102FOG: PPR repeat
nrgi|743819403|ref|XP_010931516.1|0PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Elaeis guineensis]
Swissprottr|Q9SJZ3|PP169_ARATH1.00E-102Pentatricopeptide repeat-containing protein At2g22410, mitochondrial (Precursor)
trEMBLtr|C5XN73|C5XN73_SORBI2.00E-161Putative uncharacterized protein Sb03g037910 {ECO:0000313|EMBL:EES03795.1}
trEMBLtr|C5XN73|C5XN73_SORBI2.00E-63Putative uncharacterized protein Sb03g037910 {ECO:0000313|EMBL:EES03795.1}
trEMBLtr|C5XN73|C5XN73_SORBI9.00E-38Putative uncharacterized protein Sb03g037910 {ECO:0000313|EMBL:EES03795.1}
trEMBLtr|C5XN73|C5XN73_SORBI1.00E-26Putative uncharacterized protein Sb03g037910 {ECO:0000313|EMBL:EES03795.1}
trEMBLtr|C5XN73|C5XN73_SORBI1.00E-22Putative uncharacterized protein Sb03g037910 {ECO:0000313|EMBL:EES03795.1}
trEMBLtr|C5XN73|C5XN73_SORBI5.00E-11Putative uncharacterized protein Sb03g037910 {ECO:0000313|EMBL:EES03795.1}
TAIRAT2G224105.00E-102SLOW GROWTH 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000084641508642785+
Transcript Sequence

Network for GWHGAAEX017233

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR7330.0051
PF01535.19PPR801062.70E-05
PF01535.19PPR1091370.0063
PF01535.19PPR1391695.90E-08
PF13041.5PPR_22372837.30E-10
PF01535.19PPR3133390.14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.150
SRR2545915Juvenile tuber3.430
SRP108465SRR5643513five period of Gastrodia elata5.770
SRR5643514five period of Gastrodia elata5.850
SRR5643515five period of Gastrodia elata7.420
SRR5643524five period of Gastrodia elata4.890
SRR5643525five period of Gastrodia elata1.680
SRR5643528five period of Gastrodia elata1.270
SRR5643658five period of Gastrodia elata0.960
SRR5643659five period of Gastrodia elata10.030
SRR5643660five period of Gastrodia elata8.860
SRR5643661five period of Gastrodia elata9.200
SRR5643662five period of Gastrodia elata13.240
SRR5643663five period of Gastrodia elata8.720
SRR5643664five period of Gastrodia elata8.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.030
SRR6049655Rhizomagastrodiae_C368-T10_good_13.320
SRR6049656Rhizomagastrodiae_C368-T07_good_14.780
SRR6049657Rhizomagastrodiae_C368-T07_good_14.330
SRR6049658Rhizomagastrodiae_C368-T04_good_13.250
SRR6049659Rhizomagastrodiae_C368-T04_good_12.850
SRR6049660Rhizomagastrodiae_C368-T01_good_12.930
SRR6049661Rhizomagastrodiae_C368-T04_good_13.910
SRR6049662Rhizomagastrodiae_C368-T01_good_13.110
SRR6049663Rhizomagastrodiae_C368-T01_good_14.490
SRR6049664Rhizomagastrodiae_C368-T10_good_14.000
SRR6049665Rhizomagastrodiae_C368-T10_good_14.000
SRP279888GastroGastrodia elata tuber 8.85
JuvenJuvenile tuber9.25
Mother_GastroMother tuber of Gastrodia elata 4.58
Mother_JuvenMother tuber of Juvenile 6.42