Detail information of GWHGAAEX017235/evm.TU.scaffold_80.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1476 | 1.00E-46 | Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 |
| nr | gi|743781544|ref|XP_010920919.1| | 1.99E-67 | PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9ZQC6|IRX9_ARATH | 3.00E-47 | Probable beta-1,4-xylosyltransferase IRX9 |
| trEMBL | tr|M0TP24|M0TP24_MUSAM | 5.00E-61 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P09710_001} |
| TAIR | AT2G37090 | 1.00E-46 | Nucleotide-diphospho-sugar transferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 655094 | 655973 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017235
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03360.15 | Glyco_transf_43 | 129 | 222 | 4.70E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015018 | Molecular Function | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.600 |
| SRR2545915 | Juvenile tuber | 7.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.190 |
| SRR5643514 | five period of Gastrodia elata | 2.000 | |
| SRR5643515 | five period of Gastrodia elata | 1.490 | |
| SRR5643524 | five period of Gastrodia elata | 1.140 | |
| SRR5643525 | five period of Gastrodia elata | 173.180 | |
| SRR5643528 | five period of Gastrodia elata | 83.740 | |
| SRR5643658 | five period of Gastrodia elata | 307.860 | |
| SRR5643659 | five period of Gastrodia elata | 0.780 | |
| SRR5643660 | five period of Gastrodia elata | 0.090 | |
| SRR5643661 | five period of Gastrodia elata | 0.100 | |
| SRR5643662 | five period of Gastrodia elata | 0.190 | |
| SRR5643663 | five period of Gastrodia elata | 0.360 | |
| SRR5643664 | five period of Gastrodia elata | 0.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.10 |
| Juven | Juvenile tuber | 0.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.13 | |
| Mother_Juven | Mother tuber of Juvenile | 0.15 |