Detail information of GWHGAAEX017238/evm.TU.scaffold_80.35


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428307931|ref|YP_007144756.1|2.00E-18WD-40 repeat-containing protein [Crinalium epipsammum PCC 9333]
KOGKOG13343.00E-170WD40 repeat protein
nrgi|695065560|ref|XP_009421371.1|0PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q32SG6|HIRA_MAIZE3.00E-08Protein HIRA
trEMBLtr|M0RHV3|M0RHV3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P13270_001}
TAIRAT3G456203.00E-170Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000084740292753378-
Transcript Sequence

Network for GWHGAAEX017238

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD4041745.50E-06
PF00400.31WD402933310.011
PF00400.31WD403373730.0026
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.860
SRR2545915Juvenile tuber11.460
SRP108465SRR5643513five period of Gastrodia elata13.480
SRR5643514five period of Gastrodia elata16.080
SRR5643515five period of Gastrodia elata13.440
SRR5643524five period of Gastrodia elata15.160
SRR5643525five period of Gastrodia elata10.410
SRR5643528five period of Gastrodia elata7.530
SRR5643658five period of Gastrodia elata10.270
SRR5643659five period of Gastrodia elata13.550
SRR5643660five period of Gastrodia elata12.760
SRR5643661five period of Gastrodia elata14.320
SRR5643662five period of Gastrodia elata13.190
SRR5643663five period of Gastrodia elata13.000
SRR5643664five period of Gastrodia elata13.680
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.570
SRR6049655Rhizomagastrodiae_C368-T10_good_113.600
SRR6049656Rhizomagastrodiae_C368-T07_good_111.170
SRR6049657Rhizomagastrodiae_C368-T07_good_19.870
SRR6049658Rhizomagastrodiae_C368-T04_good_18.050
SRR6049659Rhizomagastrodiae_C368-T04_good_17.530
SRR6049660Rhizomagastrodiae_C368-T01_good_17.320
SRR6049661Rhizomagastrodiae_C368-T04_good_18.880
SRR6049662Rhizomagastrodiae_C368-T01_good_111.240
SRR6049663Rhizomagastrodiae_C368-T01_good_17.600
SRR6049664Rhizomagastrodiae_C368-T10_good_111.880
SRR6049665Rhizomagastrodiae_C368-T10_good_111.880
SRP279888GastroGastrodia elata tuber 16.86
JuvenJuvenile tuber25.88
Mother_GastroMother tuber of Gastrodia elata 15.05
Mother_JuvenMother tuber of Juvenile 19.11