Detail information of GWHGAAEX017239/evm.TU.scaffold_80.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|408489495|ref|YP_006865864.1|8.00E-97ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
KOGKOG03300ATP-dependent RNA helicase
nrgi|743786447|ref|XP_010922176.1|0PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Elaeis guineensis]
Swissprottr|Q8GY84|RH10_ARATH0DEAD-box ATP-dependent RNA helicase 10
trEMBLtr|M0TW40|M0TW40_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P34380_001}
TAIRAT5G609900DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000084755366783768+
Transcript Sequence

Network for GWHGAAEX017239

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD331981.30E-47
PF00271.30Helicase_C2363425.40E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.980
SRR2545915Juvenile tuber20.140
SRP108465SRR5643513five period of Gastrodia elata21.770
SRR5643514five period of Gastrodia elata26.660
SRR5643515five period of Gastrodia elata23.650
SRR5643524five period of Gastrodia elata25.290
SRR5643525five period of Gastrodia elata22.190
SRR5643528five period of Gastrodia elata20.520
SRR5643658five period of Gastrodia elata22.400
SRR5643659five period of Gastrodia elata30.140
SRR5643660five period of Gastrodia elata27.690
SRR5643661five period of Gastrodia elata26.850
SRR5643662five period of Gastrodia elata23.180
SRR5643663five period of Gastrodia elata27.120
SRR5643664five period of Gastrodia elata22.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.350
SRR6049655Rhizomagastrodiae_C368-T10_good_124.450
SRR6049656Rhizomagastrodiae_C368-T07_good_125.400
SRR6049657Rhizomagastrodiae_C368-T07_good_123.700
SRR6049658Rhizomagastrodiae_C368-T04_good_123.340
SRR6049659Rhizomagastrodiae_C368-T04_good_121.350
SRR6049660Rhizomagastrodiae_C368-T01_good_124.480
SRR6049661Rhizomagastrodiae_C368-T04_good_124.420
SRR6049662Rhizomagastrodiae_C368-T01_good_127.430
SRR6049663Rhizomagastrodiae_C368-T01_good_129.100
SRR6049664Rhizomagastrodiae_C368-T10_good_125.540
SRR6049665Rhizomagastrodiae_C368-T10_good_125.540
SRP279888GastroGastrodia elata tuber 29.69
JuvenJuvenile tuber32.73
Mother_GastroMother tuber of Gastrodia elata 26.49
Mother_JuvenMother tuber of Juvenile 26.33