Gene detail

Detail information of GWHGAAEX017240/evm.TU.scaffold_80.38_evm.TU.scaffold_80.37

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1858	Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24)
nr	gi\|695052447\|ref\|XP_009414281.1\|	PREDICTED: anaphase-promoting complex subunit 1 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FFF9\|APC1_ARATH	Anaphase-promoting complex subunit 1
trEMBL	tr\|J3M678\|J3M678_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB05G21020.1}
TAIR	AT5G05560	E3 ubiquitin ligase, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	785948	877016	+

Transcript Sequence
>GWHTAAEX017240 CGGGCGGGAGAAAGAATCTTTCTCGTTTTTTTTATTTATTTTGCTCACCAGCGTCTGCCGCCGGAGATGCCTATTGGAGTGAGGCGCCTAACCTTGCTTCGAGAGTTCAAGCCCTTTGGACTCACCGTAGAGCAGCAGGATGGTACGTTGGACGAGAATGCACCGAAGAAGTATGAATACTTCCTCTTTGGTCCGGACGTCACCCGAGATAGGGACGATTTCCTACCTCTCGAAAACGATTTTTCTTCATCGGGATCATTATTTGGCGGCGGAGAACAGGAGCTGTTTGTTAGAGGAAATCGGATTATATGGAGCAAGGGTTTTGAAGTTCATAGAAGATACAGCTCTGCAGACAATGTTGTTACTGCTTGTTGGTGTCGCATGGATGCATTTCCCGATTCACTTCTATGTGTTTTAGAAATTGATAACTTATCGTTATACTGTGTATCCGGTGAGATCACCTGCATTCCTCTTCCTTATACCATCTCAAGTATTTGGCCTCTTCCATTCGGTTTGCTCCTACAAAAGTCATCAGATGGACACCGTACATTAACAACTGCTAGCTCTATATTACATGGAAGAGATATTGCTCGTGCTTCAAAGGATTATCATAGCCGACACTCAACTGCAAATCAGCATAGATACTTTGATCCAATTCTCAAAGAAGATGAAGCCTCATTATCATCACACTTGATTTTGAAGCATCCTATGAGAGAATTACAGGGAACTTTTGTTGAAGAAAGGGGAAAGTTGTCTGTTATGAAAGATTATGATGAGAGGACAATATGGACAACTGATGTCATACCTTTGATGGCTTCATATAATAGAGTTAGGCTGCAGCACTCTGTTTGGCTTGTAGAAGCAGTTGATAGTTGCACCAATGCCAATGCTGGTACCTTGACGGACCAATGTCCTGATGATTTTTATCTGCAAAAGTTCTCACTTCGAAGGATATGGCAGGGAAAGTGTTCCCAATCTGCTGCCAGTAAGGTGTTCCTTGCTACAGATAATGATGGGGTTCCTATATTATGTTTTTTGCTGCAAGAACAAAAACTACTAGCTGTGAGACTCCAAATTAATGTGGGAGGTGATGGGGTTTGTATTAATGTGATGCCTCAAATGATCTGGAGTATACCAGCAATTTCTGCCGCTCCAGTAACTGTGACACGCCCAAGGGTCAAAGTGGGGCGCCTGATGTTCTTGGATATAATTGTTTTGGATTGTGAAGGCTGTCTTCTTCTTTATACTGGTAAACATTGCCTGTGCAAATATTTATTACCAGATAGTATGGGAAGGGCTCTTGTTCCGCATGCTGATAATTCTTCAAAACAGTTGAAAATTTCTTGTGGTGTAAAGATTGTTGAAGTTGATAATGCTGTTGAAGGACGTTTAAATATAGCCATTAATTCTGGCCAGATATTTAGATGCGCGTTGCATACAAGCCCATCTTCCACTCTTGCAAATGACTGTATAACAGTGATGGCTGAAGGACTGCATTCTTCTTCATACCTTCATTTCTTAAGTCTTCTCTGGGGAGGCAATCATTCCACCGGCTTACAAAATAATGATTCAAATGTAAACTCAGAATGGGAATATTTTTTTAGTACAGTGAATGAAATAATTGACCGGCATCAGCCTAGTCATTCTTATTTTTCTAAAATGCCCACAAGCTCATGGGATTTTCTTATTGGTAGCGACTTTCATGCCAGCTATGATAAGCAGATTTTGAATTCTTGTATTTCAGTGGTGACTGTGTCAAATTCTGGAGATTCTCAACGTGCTGCTGTTTATGAGCATGAAAAAGATAGCCGGGAAACACTTTTTTATAAGCTGCTTTTGTCAGAAATGTTAGATTCATTACATGCCCTCTATGAAGAATTGAAGCTTAATAATCTTCGTAAGCAAGATTTGTGTAAAGTCGTTGTTCTGTTATGCAAGATTGCTGCTTCCTTGGGTGAGGCAAGCTATGTGGATTATTATGTGCGTGACTACCCCAGCATTTTATCTGATGTTTATTTCTTTCAAACGGTTAGCCTAAGGTCTCCACCAAACCTTTTCCACTGGCTAGAAACTTGCCTACGACGGGGATGCCATTTTGCTGATATGAAGGACCTTCCATCTCTTTTGCTTAAAGATAATAACAATGCATTGTGCTGGGCAAGAAAAGTAGCATGTTTTTATAGTTTATTGTTAGGTGCTGAAAGGAATGAAAAGAAACTTTCTACTGGTATCTATTATAAAATTTCCGAAGGGACATCCCAGACACCAGAGGAACTCACTGTTTTGGCTATGGTTGCTGAAAGATTTGGGCACCCACAGCTTGATCTGCTTCCTGTTGGTGTTTCTCTTCCTCTTCGTCATGCTTTGGAGAAGTGTAGAGAATCTCCTCCATCAGATTGGCCTGCAGCTGCCTATGTTCTTATTGGTCGTGAGGATCTAGCAATGGCATCTTTTAGGTTCTTGAGCAAAGATGCGGTCACACAAAACCATGTAAATTTAACGTCTTTTTCTCCGCCCTACAGACTTCGTTTGCATCCTGTGACAGTTCCGTCATCTGTTTTGGAGAATTTAAGTGTCGGTAATATTAAATTAGAGGATATAGACTCGCCTAAGTCCGTGGAAGATGGTATGGAGCATATTTTCAACTCTATCATGCAGTTACGTTTTGGCCGTGATCTTCGTTTGAATGAGGTTAGACGCTTATTATGCTCTGCAAGGATTGTGGTTATTCAAACACCTGCTAATCCTACTGCTAATGATCAGGATTTCCAACAGCATCAACTGTGGAATCTTGCACAAAGAACAACTGCTTTACCACTTGGCCGAGGGGCATTCACTTTGGCCACCACTTACACTCTTTTAACTGAGGCACTCTTTGTTCCAAAGCTCATTTTGGCTGGTCGATTACCTACACAACAAAATGCAACTGTTAACATGGACCCAAACATTAGGAGCATTTCAGAACTCAAGTCTTGGCCAGAGTTTCATAATGGGGTTGCTGCTGGGCTGAAATTAGCACCCTTTCAGGGAAAAATGTCCAGAACGTGGATTTTGTATAACAAGCCTCAGGAACCAAATTTTTCTCATGCTGGATTACTTTTGGCTTTAGGTTTGCATGAGCATTTACGTGTGCTTATGATTAGTGATGTCTATCGATATCTTTCTCAGGAGCATGACATTACAACTTGTGGGCTGCTACTTGGACTTTCAGCTTCTTATAGAGGAACAATGGATCCCGCAATATCAAAGATTCTTTTAGTCCACATTCCATCTCGCCATCCATCAACCTTTCCCGAGTTGGAATTGCCAACGGTTTTGCAGTCTGCAGCACTAATGGGTGTTGGACTTTTATATGAAGGATCGGCACATCCATTAATTACAAAAATTTTGTTGGGTGAAATAGGTCGTAGAAGTGGTGGCGATAATGTACTTGAAAGAGAAGGTTATGCTGTTGCTGCTGGATTTGCTCTGGGGCTTGTTGCTTTAGGCAAAGGCAATGATGCATTCAATTTCATGGATGCTTCTATTGATCAACTTTTTCAGTATACTGGCAGCAGAGGAGTTAACACTGAAATGTTATTTCACATAGGAACCACATCTGATGATCCTAGTCGAAGCACTGGGCAGATGTTAGAAGGGACGCACATCAATGTTGATGTAACTGCGCCTGGAGCAACAATAGCACTAGCTCTTATATTTTTGAAGACAGAATCAGAAGCAGTGGCATCAAGACTTCATATCCCTTCCACCCACTTTGAGTTGCAGTATGTAAGACCTGACTTTATCATGCTTCGGATAATTGCTCGTAATTTAATTATGTGGAGTAGAATTTGCCCCTCAAAAGGTTGGATTGATTCTTTGGTTCCTGGAATTGTGAAGCTAACAAATGAGGCAAATGATAATGATGAACTTGATAGGCCAGCTCTTGTGCAAGCATATGCTAATATTGTTACTGGAGCTTGCATTTCTATTGGGTTAAAGTATGCTGGTACTAGAAATGGTGATGCCCAGGAGTTGCTTTACAATTATGCCCTCTACTTCCTTAGCGAGATGAAATATGTTTCTCACTCTAATAATAATGATTTACCCAAAGGTCTTCTGCAACATGTTGATCGAGGAACTTTGGAGATATCCGTGCATCTTGTTGCTCTTTCTTTATGTGTGGTTATGGCTGGATCTGGCCATCTACAGACATTTAGATTACTTAGGTACCTCCGAAGCCGAAGTTGTGTAGAAGGCCACATAAATTATGGAATCCAGATGGGTATAAGTTTGGCTATTGGATTCTTGTTTCTTGGAGGTGGTGTTCAAACCTTTTCTACTAGAGACAGTGCAGTTGCAGCTTTGCTTATAACTCTCTATCCACGCCTTCCCACTGGGCCAAATGATAATCGTTGTCATCTGCAGGCTTTTAGGCATATGTATGTCATTGCTGCCGAGTCTCGCTGGTTGCAAACTGTAGATGTTGACACGGGCTTGCCTGTTTATGTTCCTCTTGAGGTGACTGTTCTGGAAACTGATCATTTTGCAGAGACAAGCTATAGCGAAGTTACTCCGTGTATTCTTCCCGAGAGATCAATGTTGAAGAATGTTCGGGTTTGTGGGCCTAGATATTGGCCTCAAATGATAGAGCTTAAGCCCGAAGATAAAACCGGGCTGAAATATGCGGACAGGAGTGTTCCTATTAATGGTGGACTCCTTTACGTAAAGCGAAAGGTTGGATTTTGTTCATATGTCGACGATCCGATTGGATGTCAGTCTCTGCTGTCAAGGGCTATGCACACGGTCTTTGATAAATCAAGCTTAAGCGATTCTTCAAGTAGATTCAGAAACGAATGCAAGCCCGGTGCCAATAAAGTTGACCAATTGGTTGGCACCTTTTCAGCTGATCCAAGCTTGATAGCTTTTGTACAAGTCTGTTGTGAGTCATCATGGAATAGAGGACATGATGCTGGCTTTCAGGAGTTCTGCTCACAGGTGATATTCGAATGCGTCAGCAATGATAGGCCGGCCCTTCTGCAGATCTATCTCTCGCTCTACACAACGATTGTGTCGATGTGGGAGCAGGTTAAGAGTGGCCGCGTTATTCTCCCCGATTCATCTTTTCTCAACAGCCTAAAGCTTGCGTTGGCGTACAACGAAGCGTCGAGCAGGGGAAGGCTGTGCAATAAAAAGGGTGGAGGGGGCATCATGCAGGCGGCGTTTTTGGAGTCGATAAGGAAGCAGGTGGAGGAGATGGTTGGGAGAATGGGTGTGGAGGAGGATCTGAAGGCGTACATGGAAAAGGCGGAGAGATGGCCTTCTGCGGCTCTCTGTTGCTACCTTCACTGGTACGCCGTGCCGCCCCCCCACGCCATCAACGACGCCCTTCTTAATATCAGACGCAGAACGATTCCTCCCTCCTCCTCCGCCCTCCCCCTCCTCCGTCTCCTCCTTCCCGCCACCCACTTCCGCGCCATTGCCCATATCCACCGCCTCAATTTTCCTCCCCCCTGATTCTCCCTCCTCCTTTTGCCCTAATCCTTTTTTATTTTCTATTTTTTAATGCATCTTTATTAATTTATGTACTCTTTAGCAAGATAGGCTCGGGTTTGATTGCTAGTACATTTGAGCTTTTTAATCAATTTTAAAAGAAAAATTTATATGATTTGTGAGAATTGAACTCATGAGATGGAATATCTTAAAACTTTTAGGTTATGATATTATTCATTTTATGTGTTCGAAATGTATATATGGCCAAATAGTCAATTAGAAATTTAATGTGAT

Network for GWHGAAEX017240

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12859.6	ANAPC1	113	219	5.10E-16

Protein Sequence

>GWHPAAEX017240
MPIGVRRLTLLREFKPFGLTVEQQDGTLDENAPKKYEYFLFGPDVTRDRDDFLPLENDFSSSGSLFGGGEQELFVRGNRIIWSKGFEVHRRYSSADNVVTACWCRMDAFPDSLLCVLEIDNLSLYCVSGEITCIPLPYTISSIWPLPFGLLLQKSSDGHRTLTTASSILHGRDIARASKDYHSRHSTANQHRYFDPILKEDEASLSSHLILKHPMRELQGTFVEERGKLSVMKDYDERTIWTTDVIPLMASYNRVRLQHSVWLVEAVDSCTNANAGTLTDQCPDDFYLQKFSLRRIWQGKCSQSAASKVFLATDNDGVPILCFLLQEQKLLAVRLQINVGGDGVCINVMPQMIWSIPAISAAPVTVTRPRVKVGRLMFLDIIVLDCEGCLLLYTGKHCLCKYLLPDSMGRALVPHADNSSKQLKISCGVKIVEVDNAVEGRLNIAINSGQIFRCALHTSPSSTLANDCITVMAEGLHSSSYLHFLSLLWGGNHSTGLQNNDSNVNSEWEYFFSTVNEIIDRHQPSHSYFSKMPTSSWDFLIGSDFHASYDKQILNSCISVVTVSNSGDSQRAAVYEHEKDSRETLFYKLLLSEMLDSLHALYEELKLNNLRKQDLCKVVVLLCKIAASLGEASYVDYYVRDYPSILSDVYFFQTVSLRSPPNLFHWLETCLRRGCHFADMKDLPSLLLKDNNNALCWARKVACFYSLLLGAERNEKKLSTGIYYKISEGTSQTPEELTVLAMVAERFGHPQLDLLPVGVSLPLRHALEKCRESPPSDWPAAAYVLIGREDLAMASFRFLSKDAVTQNHVNLTSFSPPYRLRLHPVTVPSSVLENLSVGNIKLEDIDSPKSVEDGMEHIFNSIMQLRFGRDLRLNEVRRLLCSARIVVIQTPANPTANDQDFQQHQLWNLAQRTTALPLGRGAFTLATTYTLLTEALFVPKLILAGRLPTQQNATVNMDPNIRSISELKSWPEFHNGVAAGLKLAPFQGKMSRTWILYNKPQEPNFSHAGLLLALGLHEHLRVLMISDVYRYLSQEHDITTCGLLLGLSASYRGTMDPAISKILLVHIPSRHPSTFPELELPTVLQSAALMGVGLLYEGSAHPLITKILLGEIGRRSGGDNVLEREGYAVAAGFALGLVALGKGNDAFNFMDASIDQLFQYTGSRGVNTEMLFHIGTTSDDPSRSTGQMLEGTHINVDVTAPGATIALALIFLKTESEAVASRLHIPSTHFELQYVRPDFIMLRIIARNLIMWSRICPSKGWIDSLVPGIVKLTNEANDNDELDRPALVQAYANIVTGACISIGLKYAGTRNGDAQELLYNYALYFLSEMKYVSHSNNNDLPKGLLQHVDRGTLEISVHLVALSLCVVMAGSGHLQTFRLLRYLRSRSCVEGHINYGIQMGISLAIGFLFLGGGVQTFSTRDSAVAALLITLYPRLPTGPNDNRCHLQAFRHMYVIAAESRWLQTVDVDTGLPVYVPLEVTVLETDHFAETSYSEVTPCILPERSMLKNVRVCGPRYWPQMIELKPEDKTGLKYADRSVPINGGLLYVKRKVGFCSYVDDPIGCQSLLSRAMHTVFDKSSLSDSSSRFRNECKPGANKVDQLVGTFSADPSLIAFVQVCCESSWNRGHDAGFQEFCSQVIFECVSNDRPALLQIYLSLYTTIVSMWEQVKSGRVILPDSSFLNSLKLALAYNEASSRGRLCNKKGGGGIMQAAFLESIRKQVEEMVGRMGVEEDLKAYMEKAERWPSAALCCYLHWYAVPPPHAINDALLNIRRRTIPPSSSALPLLRLLLPATHFRAIAHIHRLNFPPP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03348	APC1	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0005680	Cellular Component	anaphase-promoting complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.730
SRP064423	SRR2545915	Juvenile tuber	8.080
SRP108465	SRR5643513	five period of Gastrodia elata	6.400
	SRR5643514	five period of Gastrodia elata	6.580
	SRR5643515	five period of Gastrodia elata	5.100
	SRR5643524	five period of Gastrodia elata	5.880
	SRR5643525	five period of Gastrodia elata	9.140
	SRR5643528	five period of Gastrodia elata	7.120
	SRR5643658	five period of Gastrodia elata	8.950
	SRR5643659	five period of Gastrodia elata	6.900
	SRR5643660	five period of Gastrodia elata	7.670
	SRR5643661	five period of Gastrodia elata	6.010
	SRR5643662	five period of Gastrodia elata	5.700
	SRR5643663	five period of Gastrodia elata	6.340
	SRR5643664	five period of Gastrodia elata	6.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.060
SRP279888	Gastro	Gastrodia elata tuber	7.23
	Juven	Juvenile tuber	7.97
	Mother_Gastro	Mother tuber of Gastrodia elata	6.69
	Mother_Juven	Mother tuber of Juvenile	8.09