Detail information of GWHGAAEX017247/evm.TU.scaffold_80.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|288931813|ref|YP_003435873.1| | 2.00E-20 | DNA repair and recombination protein RadA [Ferroglobus placidus DSM 10642] |
| KOG | KOG1433 | 1.00E-119 | DNA repair protein RAD51/RHP55 |
| nr | gi|672109866|ref|XP_008792404.1| | 4.02E-173 | PREDICTED: DNA repair protein RAD51 homolog 2 [Phoenix dactylifera] |
| Swissprot | tr|Q9SK02|RA51B_ARATH | 5.00E-151 | DNA repair protein RAD51 homolog 2 |
| trEMBL | tr|W5AA57|W5AA57_WHEAT | 4.00E-164 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_1BS_89FFF2584.1} |
| TAIR | AT2G28560 | 1.00E-119 | DNA repair (Rad51) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 942519 | 947166 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017247
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08423.10 | Rad51 | 84 | 337 | 6.90E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10869 | RAD51L1, RAD51B | Homologous recombination | map03440 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0008094 | Molecular Function | DNA-dependent ATPase activity |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.130 |
| SRR2545915 | Juvenile tuber | 3.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.470 |
| SRR5643514 | five period of Gastrodia elata | 5.800 | |
| SRR5643515 | five period of Gastrodia elata | 5.540 | |
| SRR5643524 | five period of Gastrodia elata | 5.450 | |
| SRR5643525 | five period of Gastrodia elata | 3.980 | |
| SRR5643528 | five period of Gastrodia elata | 3.890 | |
| SRR5643658 | five period of Gastrodia elata | 4.670 | |
| SRR5643659 | five period of Gastrodia elata | 5.580 | |
| SRR5643660 | five period of Gastrodia elata | 5.150 | |
| SRR5643661 | five period of Gastrodia elata | 6.050 | |
| SRR5643662 | five period of Gastrodia elata | 4.310 | |
| SRR5643663 | five period of Gastrodia elata | 5.040 | |
| SRR5643664 | five period of Gastrodia elata | 4.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.50 |
| Juven | Juvenile tuber | 8.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.74 | |
| Mother_Juven | Mother tuber of Juvenile | 7.50 |