Detail information of GWHGAAEX017248/evm.TU.scaffold_80.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336253975|ref|YP_004597082.1| | 1.00E-22 | Catalase-peroxidase [Halopiger xanaduensis SH-6] |
| nr | gi|212896802|gb|ACJ38537.1| | 1.34E-168 | ascorbate peroxidase [Oncidium hybrid cultivar] |
| Swissprot | tr|P48534|APX1_PEA | 2.00E-156 | L-ascorbate peroxidase, cytosolic |
| trEMBL | tr|B8XF08|B8XF08_ONCHC | 5.00E-169 | Ascorbate peroxidase {ECO:0000313|EMBL:ACJ38537.1} |
| TAIR | AT1G07890 | 1.00E-147 | ascorbate peroxidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 968898 | 985013 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017248
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00141.22 | peroxidase | 27 | 225 | 6.70E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00434 | E1.11.1.11 | Metabolic pathways | map01100 |
| Ascorbate and aldarate metabolism | map00053 | ||
| Glutathione metabolism | map00480 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006979 | Biological Process | response to oxidative stress |
| GO:0004601 | Molecular Function | peroxidase activity |
| GO:0020037 | Molecular Function | heme binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 436.080 |
| SRR2545915 | Juvenile tuber | 507.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 620.850 |
| SRR5643514 | five period of Gastrodia elata | 861.710 | |
| SRR5643515 | five period of Gastrodia elata | 697.480 | |
| SRR5643524 | five period of Gastrodia elata | 859.460 | |
| SRR5643525 | five period of Gastrodia elata | 1402.800 | |
| SRR5643528 | five period of Gastrodia elata | 1466.280 | |
| SRR5643658 | five period of Gastrodia elata | 1088.700 | |
| SRR5643659 | five period of Gastrodia elata | 293.490 | |
| SRR5643660 | five period of Gastrodia elata | 317.940 | |
| SRR5643661 | five period of Gastrodia elata | 311.900 | |
| SRR5643662 | five period of Gastrodia elata | 273.580 | |
| SRR5643663 | five period of Gastrodia elata | 311.840 | |
| SRR5643664 | five period of Gastrodia elata | 242.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 812.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 762.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 875.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 683.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 658.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 621.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 630.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 780.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 935.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 689.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1006.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1006.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 206.57 |
| Juven | Juvenile tuber | 225.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 481.74 | |
| Mother_Juven | Mother tuber of Juvenile | 238.91 |