Gene detail

Detail information of GWHGAAEX017251/evm.TU.scaffold_80.49

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|747058234\|ref\|XP_011075451.1\|	PREDICTED: probable auxin efflux carrier component 1b isoform X2 [Sesamum indicum]
Swissprot	tr\|Q67UL3\|PIN1C_ORYSJ	Probable auxin efflux carrier component 1c
trEMBL	tr\|F6HR60\|F6HR60_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57109.1}
TAIR	AT2G01420	Auxin efflux carrier family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	1014622	1017531	+

Transcript Sequence
>GWHTAAEX017251 GTTGTAGACCGCAGCTGCACCCTATTGGCTAAAATGTCCATTATTCCAACAGCGACAACAGCCTCAGAGCCTGAGCTTCCCCCTCTCAACTCCCGACGCCCCTTTAAACCACATCTTTTCTTTCTTGTCTACCATTAAAAACCCCAACAAATGCACAGACATTAACCCCCTCCCTCCATTTTCTCTGCTCTTCCCCTCCCTCGCCATTGCAGAATCTCACATGGGCTGATTTCTTGCAGCTCCATTTTACCTCCTTCATCCCTGTTCCTGTTCTTCATTCGCCTGTTCTTCCTCTCCCAATACGCTTCCTTTGAGCTTCATTTCTGTCCCAATCCTTGTTACGAGTGAAGACGGAAACTTTTTCACCCGCCCCCTATTCTTCCTCTCCCAATGCGATTCCTTTGAGCTTCCATCTCTGTTTTAGGCCTAGAATTCAGAGCAAAAAACAAAAATTAAAAACGCAAACTTACTCACTTCCTCTACCAAAAAAAAAAAATGATAACCGCGTCGGACTTCTACCACGTCCTCACAGCCGTAGTTCCCCTCTACGTCGCCATGATCCTCGCCTACGGCTCCGTTAAATGGTGGAAGATCTTCACTCCTGAGCAATGCTCCGGCATCAACCGCTTCGTCGCCCTCTTCGCCGTCCCCCTCCTCTCCTTCCACTTCATCGCCTCCAACAACCCTTACGCCATGAACTACCGCTTCATCGCCGCCGACACTCTGCAGAAGCTCATCGTCCTCTCTGCTCTCACTCTCTGGTCCAATCTCACTGCCCGCGGCTGCCTCGAGTGGTCCATCACCCTCTTCTCACTCTCCACCCTTCCCAACACCCTCGTAATGGGCATCCCTCTCCTCAGAGGCATGTACGGTCTCGATTCCGGCACTCTAATGGTCCAAATCGTCGTCCTCCAGTGCATCATCTGGTACACTCTCATGCTCTTCCTCTTCGAGTACAGAGGCGCTCGCCTCCTCATTGCCGAGCAGTTCCCGGACACCGCAGGTTCCATCATCTCCTTCCGCGTCGACTCCGACATTCTCTCTCTTGACGGAAAGGAGCCCCTTCAGACTGAGGCTGAGGTGGGCCAGGACGGCAAGCTCCATGTAACTGTCCGCAAGTCCTCCAGCTCCCGCTCAGAGATCTTCTCCCGCCGTTCCCACGGCGTCAATTCCGTCACTCCCCGACCGTCCAATCTCACCAATGCTGAGATATACTCCCTCCAATCCTCCCGCAATCCCACCCCCAGAGGCTCCAGCTTTAACCACGCCGATTTTCACTCTGTCGCCAATGGGAAGAGCCCCCGGCACTCCAATTTCGACGAAGAAGCTCCTCCTCCTGCCAAGAAGGACTTGCATATGTTCGTCTGGAGCTCCAGCGCTTCCCCTGTTTCCGAACCCGGCCTGCATCCCTTCCATCATCGCAAAGAAGGCAATGAAGGCTATGGCGACTGCAACAGGGATGATTTCAGCTTCAGGAACCAGCCTCAGAGGGATGCGCAGCCGGGCCTGTCGAAGCTGGGGTCCAACTCCACCGCAGAGCTGCGCCCGAAGAACGGGGATGCGCCTGCAATGCCGCCAACCAGTGTGATGACTAGACTGATTCTGATCATGGTCTGGAGGAAACTCATCAGGAACCCCAACACCTATTCCAGTCTCTTCGGTTTATCTTGGTCACTGGTTTCCTTCAGGTGGGAGATTGAGATGCCGGCCATCATTGCTAAGTCGATATCTATACTCTCTGACGCTGGGCTAGGGATGGCGATGTTTAGCTTGGGCTTGTTCATGGCTTTGCAGCCAAAGATTATTGCTTGTGGAAATGCGATTGCTTCATTCGCGATGGCCGTTCGATTCTTGGCCGGGCCGGCAGTGATGGCGGCAGCTTCCTTTGCCGTCGGGCTTCGAGGGGTTCTCCTCCATATTGCCATAGTGCAGGCTGCTCTACCGCAAGGGATTGTCCCTTTTGTTTTTGCCAAGGAGTACAACGTGCATGCCGACATCTTGAGCACAGGAGTCATATTTGGCATGCTCATTGCTCTGCCCATAACCCTTCTCTACTACATATTATTGGGTCTCTGA

Network for GWHGAAEX017251

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03547.17	Mem_trans	9	521	1.20E-186

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.660
SRP064423	SRR2545915	Juvenile tuber	4.800
SRP108465	SRR5643513	five period of Gastrodia elata	2.950
	SRR5643514	five period of Gastrodia elata	5.720
	SRR5643515	five period of Gastrodia elata	3.280
	SRR5643524	five period of Gastrodia elata	5.810
	SRR5643525	five period of Gastrodia elata	0.180
	SRR5643528	five period of Gastrodia elata	0.530
	SRR5643658	five period of Gastrodia elata	0.950
	SRR5643659	five period of Gastrodia elata	10.520
	SRR5643660	five period of Gastrodia elata	7.500
	SRR5643661	five period of Gastrodia elata	4.250
	SRR5643662	five period of Gastrodia elata	2.380
	SRR5643663	five period of Gastrodia elata	4.870
	SRR5643664	five period of Gastrodia elata	1.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.960
SRP279888	Gastro	Gastrodia elata tuber	2.27
	Juven	Juvenile tuber	3.16
	Mother_Gastro	Mother tuber of Gastrodia elata	0.54
	Mother_Juven	Mother tuber of Juvenile	0.50