Gene detail

Detail information of GWHGAAEX017254/evm.TU.scaffold_80.52

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672176360\|ref\|XP_008808253.1\|	PREDICTED: uncharacterized protein LOC103720365 [Phoenix dactylifera]
trEMBL	tr\|M0SH03\|M0SH03_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P22870_001}
TAIR	AT5G18980	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	1049595	1052595	+

Transcript Sequence
>GWHTAAEX017254 CCCTAAAATAAATTAAAAAAAGAAAAAGAAAAAAATGTATTTAGAATTTCTGCCCGCCCTAAAATAAACCAAAAGTATTTTTATATTTTTCAAAAAGAAATTATATTTTTTCTGTCTCATTTATCCAATAGATAAGTTGGCATCGTCCCCTAAATTTTAAATATTAAAACATACCTTTCATTAGCAATCCAACCGTCTTATTTAAATATGACTGCCGTTTGCAGAGCATTTTGGGAGGGGGGGGGGGTCTTCAATCTCTGAGACCAATGAAAACCAACCGATCAAACAAAAACACTGGTGATGTTGAAACCTTCCAACTAGACGTCATCCGGCGGCCGCCCGACCAGGGGAACGGCGCTGCCGCGGCCGCCGGCGACAGCTTCGGGTCGACCCTCTTTGAGCCGCAGAGGGAGCTCAGTGACCGTACGCCCACCTCCCGCAGCTTCCGCGCCGCCTCCATCTCGGACGCCCCGGAGAAGAGGCTGACCCTCTTCGCCCTCCGCCTCGCCGTCATCGAAAAGACGGCGAGCGGCCTCGGCCAGATGGCCTTTGTTTGGGCCACAGTCGTCCTCCTGGGCGGCTTCGCCTCCGCCCTCAAGCCCAAGGACTTCTGGTTCGTCACTGCCATCATCGTCGTCGAGGCTGCCCGTCTCTTCACCCGAAGCCACGAGCTCGAATGGCAGCACCAATCAACTCGCTCCCTCCCCGCCGTCCCCTCCTCCTTCCGCCGCCTTCGCCCTCCTCTCTCCATCCTCCGCGCCGCCGCCCGGCCTTTGTCATTCGTAGCTCGCCCCAGCCGCCGCCTCGCCCGAAACCTCCAGCAGCTCAACGGCATCGCAGCGCTGAGGGAGCCGAAGCGGACCTGGCTGCCCGCGGACGTCCCCTTCCTCCCTTATTCCGGCTGGATATTCGTCTCCAGCAGCATCAGCCGGCTTCTCTACTGGCTCCAGATTTGGGCGGCCGCCGCCTGCGTGCTCCTCTCGCTGTCCCGGCTCTGGCAGCAGGACTACGGCGGCGACGGCGACGGGCAGACCAACGAGAATTCCGCACTCAACGTCTTCTATGGCCTCGCGCTGGGGGAGGCGCTCATGTTCCTGCTGGAGAAGGGGTACTGGGCATGGAAAATTCAGGTGGGCAGATTGGTGGAGCGGGTGTGCGAGGAGTGCGGGCTGGGGCCGAGGGTCGGCCCGGTGGCCCTCCGCCGATTCTTCTATGACGCTTACTCCAAGTGCGTCGACGGGAGCGTCTTCGACGGCCTGAAGATGGAGCTAGTCGGTTTCGCGGAGGAACTTCTCTGCTCCGACTCCACGGACGAGCAGCTCATCGGGGCTGGTATCCTCCAGAGCTTCGCCAGCAGCAGCCGCTTCGCCGACGGCACGCTGCGCAAGATCGGGAGCTCCTCCCCTGTGATCGAACGGCTGATTGAGATGCTCACCTGGAAGGACCCGGCGGAGGAGGAGATCCGCCGCTCAGCTGCGGAAATTGTCTCTAAGCTCGCCTCCAGGAAACAGCGGGCGCTGCGGGTGGCAGCGATCCCGGGAGCGATGGAGTCGATCGCGTCGCTGCTGTACGCCGGCGGACCTATCGCCGGTGGAAGGCCGTTCGAGGCGTCTCCTAGGGCGATGGTGGTGGTGGATAGGGAGGATTACGAGTTCTCGTCGTTCAACTTGCTGGGGCTTCAGATCCTGAAGCGGTTGGCTAGGGATCACGACAACTGCTGGAAGATCGGGAGCGCGCGCGGGCTGCTGGCGCGGATCATCGATCTGACGAGCGCAGGGCCGGCGCTGCTGCGGGAAGACCGTGCGCTGGAGTCGCGGATCAAGACGGTGCGGCGCGCCTTGCAGGTCGTGAAGATGCTGGCCTACGCGACAGGGGAGACGGGGAGGACGCTGCGGAGGGAGATATCGGAGATCGTCTACTCGATAAGCAATGTAAGGGAGTTGTTGCAGTACGGGGAGAGGCATCTGAAGCTTCAGAAGCTGGGGGTGGAGATACTCACCAGCTTAGGGATGGAGGAGGAGACGAGGGAGAGGATCGGGGCCACTGGGAGCATGCTGCGGCTGATCCTCGCAGTGTTCTTCCAGCCGAGAGTGACGGAGGAGGTCGGATCCGTCTGCAACGAGGCGGGGGAGGCGCTGGCGATGCTGGTGCTCGACAGCAGGAACAACTGCGATAGACTGCTCAGGGAAGGGAAGGACGCCGTGGGAAGGCTGCTGGCCGCCCTCGCAGATCCCGTGTTGAGAGTAAACGCGTCCAGGATATTGAGGGGCCTCTGCGATTACTCTCCGCCCGAGCGATTCGAACAGATCCGGCAGATCGCCGATGCAATGCCCCTTGTTCTGAGGACGATAATGGAGGAGAATGAGAAGGAGAAGCTCCTAGAGGTGTCAATCGGCCTTGCCCTGCAGATCCTGAAATTGGGGGGGGACTCAGAAATCCGACGGGACGAAATTGAGAAAGCCGGGATCAAAGACGAGGATCTCGCCGGAAAGCTGATGAGGATTCTGAGGACTTACGATAGCCCGGACAGCAAGGTTCCGAGGATGAGGAGATTCGTCATCGAGCTCACCATTGCACTGATGAAGAGCGGCGAGTGCAGCAGCAGAAGGTACGTCAGATTGTTCAGAGATTTGGGAATGGAGGAGGCCCTGAAGCGAACGGCGGATACAACGTCCGAGCTCGAATGCTTCAACGTCTTCTCCGGAAGCGTGGGATTGGACCGCCATAGGGTTACGCTCTCTTCTCTCGTCGATGCGGCGCTCCACCTTTTGGCTGAATGATGCTCCTCCATCACACAGTTTATATAGCAGTGATTTTAGAATCCTACACACAGGATTTGTGGCTTTACAATTCTTGTTTTTGAGTTTCTTATTTTTATTTATTTTATGATATAAAATTTAGTCTTTTAAATCTTGGCACTGTATATTATATATTTACTATTTTTCATTATTTCATGTATATGGTATAACATTTGGGGATGTTAAAATCTTTTCGGAATTTG

Network for GWHGAAEX017254

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.760
SRP064423	SRR2545915	Juvenile tuber	23.320
SRP108465	SRR5643513	five period of Gastrodia elata	42.560
	SRR5643514	five period of Gastrodia elata	37.870
	SRR5643515	five period of Gastrodia elata	43.850
	SRR5643524	five period of Gastrodia elata	44.170
	SRR5643525	five period of Gastrodia elata	52.550
	SRR5643528	five period of Gastrodia elata	85.440
	SRR5643658	five period of Gastrodia elata	18.820
	SRR5643659	five period of Gastrodia elata	21.980
	SRR5643660	five period of Gastrodia elata	19.390
	SRR5643661	five period of Gastrodia elata	17.850
	SRR5643662	five period of Gastrodia elata	13.220
	SRR5643663	five period of Gastrodia elata	11.090
	SRR5643664	five period of Gastrodia elata	14.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	79.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	74.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	94.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	72.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	80.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.550
SRP279888	Gastro	Gastrodia elata tuber	13.75
	Juven	Juvenile tuber	23.29
	Mother_Gastro	Mother tuber of Gastrodia elata	165.31
	Mother_Juven	Mother tuber of Juvenile	70.63