Gene detail

Detail information of GWHGAAEX017256/evm.TU.scaffold_80.54

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|431799186\|ref\|YP_007226090.1\|	beta-galactosidase/beta-glucuronidase [Echinicola vietnamensis DSM 17526]
KOG	KOG2230	Predicted beta-mannosidase
nr	gi\|672165483\|ref\|XP_008802646.1\|	PREDICTED: mannosylglycoprotein endo-beta-mannosidase isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q5H7P5\|EBM_LILLO	Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit
trEMBL	tr\|V4T0C1\|V4T0C1_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR46567.1}
TAIR	AT1G09010	glycoside hydrolase family 2 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	1142364	1276848	-

Transcript Sequence
>GWHTAAEX017256 ATGAAAGTTCTTCTTTTGTTCTTTCTACTTCAAATCTCACTCTTTATTTACTCATCCTTTCCTTCCCCTTCCCTCGCCGGAAAGAACAGCCGAGGAAACAAATCAGTCGCGGAGAATATTCTTCGGCGGGCAGAGAGCTTGCGATCTCCTTCCGTTCAGTTGGCCGCTGCTCATGGCGTTCTTCGCCGTTTGTTGCCGAACCACACTAACAGTTTCCTTCTTAAAGTCGTCCCGAAGGGGCTTTGCGCACGATTCAACTGCTTTCGTATAAGTAATGCAATCAATTCGAACCCAAACGGCCCAGAAATAATGATTGAGGGCAGCACAGCTGTCGAGGTTTCATCTGGACTTTATTGGTATTTGAAATACTGGTGTGGTGCTCATATATCCTGGGACAAGACAGGTGGAGTTCAGGTGGCTACTGTTCCTTCACCTGGTTCTTTGCCACATGTGGAAAGCCAGATGGTAAAAGTTGAACGTTCAGTTCCATGGAACTATTATCAGAATGTTGTTACCTCAAGTTATTCTTCTGCGTGGTGGGATTGGAAAAGATGGGAAAAAGAGATAGACTGGATGGCTCTTCAAGGAGTTAACTTGCCTCTCGCATTTACTGGACAAGAAACTATTTGGCAAAAAGTTTTCAAGGATTTTTATGTCACGAATGAAGATCTGGGTTATTTTTTTGGTGGACCAGCCTTTCTTGCATGGGCTCGAATGGGTAATTTACATGGGTGGGGTGGACCACTCTCTCAGAATTGGCTGGATCAGCAGCTGAACCTCCAAAAACTTATAATTTTTCGTATGATTGATCTTGGAATGACTCCTGTTCTGCCTGCATTTTCTGGAAATGTTCCTGCAATATTCAAAAAGATGTTTCCTGCAGCCAACATAACTAGACTGAGCAATTGGAATACTGTCAATGGTGATCCCAGGTGGTGCTGTACATATCTTCTTGATCCATCGGATCCTTTATTTAATGAAATTGGAAGATCATTTATCAATAAACAAATTAAAGAATATGGACATATAACTAGCATCTACAGCTGTGACACTTTTAATGAGAACTTGCCGCCTACAAATGATCCAAATTACATCTCATCACTTGGAACCGCTGTGTACGATGCAATGAAAAAAGGTGACAGTGATGCAATATGGTTAATGCAGGGTTGGTTGTTTTCATCGGATGCAGAGTTTTGGAAGCCACCTCAAATGCAGTCTCTTCTACACTCTGTTCCAATTGGAAAGATGATTGTCCTTGACTTATTTGCTGATGTAAAACCGATTTGGAAAATATCTTCACAATTTTATGGTGTTCCATATGTCTGGTGTATGCTACACAATTTTGGCGGCAACATTGAAATGTATGGCATACTTGATGCAATTTCTTCTGGCCCTATTGATGCCCGGAACAGCAAAAACTCGACTATGGTTGGCGTTGGCATGTGCATGGAAGGCATAGAGCAGAACCCAGTAGTCTACGAGCTTATGTCTGAAATGGCATTTCATAGTAACAGATTTCATGTTGAGGACTGGCTAAAAAGTTACTCGTACCGAAGATATGGTCGAGCTGATCACCATATTGAGAAAGCGTGGAAAATTCTTTACCATTCAATATACAATTGCACTGATGGGATTGCTGATCACAATAGAGATTTTATCGTTCATTTTCCCGACATCAGTCCACATTTGGAGCATCATCAAGCTTTACATATCTCATCAAAATATAAGCATGACATCAGTCCACATTTGGAGCTCAAATCCAATTCTCATGAACCGCATCTATGGTATTCAACTAAAGATGTGGTGGATGCGCTGAAACTCTTTATAGATGCAGGGAGCAGTCTAGAAGAAAGCCTTACATACAGATATGACCTCGTTGACCTCACAAGGCAAGTTCTTGCCAAACTATCGAATCAGTTTTATCTTGATGCCATTAATGCATATCGTCGAAATGATGCAGACGGTTTGAATCAGCAAATTCAAAAGTTTACAGGGCTTGTTCAGGACATTGACACTCTGCTTGCATCTGATGACAATTTTCTGCTGGGAACATGGCTTGAGAGTGCCAAGAAATTAGCAGTAAATCACGATGATAGGAGACAATTTGAATGGAATGCCAGAACACAAATTACTATGTGGTTTGATAACACAGAATACAATCAGAGCAAACTTCATGATTATGCAAACAAATACTGGAGTGGGCTTCTAAAGAACTACTATCTGCCAAGAGCCTCAACTTATTTCAGCTACCTCTTACAAAGCTTGAGAAACAACATTAGTTTTTCCTTTGAGGAATGGAACAGAGATTGGATTTCTTATTCCAACAGATGGCAAGAAGGCCAGGAACTGTACCCAGTTAAAGCTGAAGGAGATAAAGAAGTAAGTGAGGGCTCTATGGCGGAAATGGCAACAGTAGGGAAGACGAAGCTGAACTCGGGTTGGCTGGCGGCGAGATCAACTGAAGTGGAGGCCACAGGCGTGCAGCTTACCACTACCGCGTCTCCCTCTGGACCTTCTTCTCCATGGATGGAGGCTGCCGTCCCCGGCACAGTTTTAGGAACTTTGTTGAAGAACAAACTGGTTCCAGATCCCTTTTATGGATTGAACAATGAATCAATACTTGATATTGCTGATTCAGGGAGGGAGTATTACACATTTTGGTTTTTCACTACATTTGAGACAAAACTGACAGAAAGTCAGCATGCATATCTCAACTTTCGTGCAATCAATTACTCAGGGGATGTGTACTTGAATGGGCACAAAAGGATTCTTCAAAAAGGGATGTTTAGAAGACATTCTCTGAATATAACTGATATTCTTAACCCTGATGGGAAAAATTTACTTGCTGTAATTATCAATCCTCCTGATCATCCTGGTGTAATTCCTCCTCAAGGAGGTCAAGGAGGTGATCATGAGATCGGAAAGGATGTTACTGCTCAGTATGTTGAAGGCTGGGATTGGATGACACCAATAAGGGATAGGAATACTGGGATTTGGGATGAAGTGTCAATTTCAATTACTGGTCCTGTCAAGCTAACCGATCCACACGTGGTTTCATCCTTCTTCGATAACTATACAAGATCCTACTTACATACCACAATTGATTTGGAAAACCTAAGCTCACGGATTGCAGAGTGTTCTTTAACCATTCAAGTGACAGAAGGATTAGATAAAGATCTTCTTCTACTGGAGCATCATCACTCATACGAAATTTTGATCCCTCCACGAGCCCTTCTACAGTACACACTTTCTCCACTTTTCTTTTACAAGCCAAATTTGTGGTGGCCCAATGGCATGGGTAAGCAGTCATTATATAGCATTGAAATAAGTATTGATGTAAAAGGCTTTGGAGAATCTGATACATGGTCACACCAGTTTGGATTTAGGAAGATTGAGAGCACAATAGATAAGGACACTGGTGGAAGATTATTCAAAGTAAATGGTGAACGAATTTTCATCCGCGGAGGAAATTGGATCTTGTCGGATGGGCTGTTAAGGCTTTCAGCTAAACGATACATGACAGACATCAAGTTTCATGCTGATATGAACTTCAACATGCTTCGTTGCTGGGGAGGTGGATTAGCTGAGAGGCCAGAATTTTATCATTATTGTGATGTTTATGGTCTATTGGTGTGGCAAGAGTTTTGGATAACGGGTGACTGTGATGGAAGAGGAAAACCGGTATCGAACCCAAATGGCCCATTAGACCACGACCTTTTCCTCCTTTGCGCACATGACAGCATTAAATTCCTCAGGAATCATTCGAGCCTCGCTGTTTGGGTTGGAGGCAATGAGCAAATCCCTCCAAAAGACATCAATGCTACTCTTATGAATTACCTAAAGATCCATCCTCTATTCAAGTCGCACAATGAAAATAATTTCATCTTAAGCGAAGAATTGTCACAAGAATTAACTGATCCAAGCCGATTTCTTGATGGAACGCGTGCTTATGTTTCAGGATCGATGTGGGATGGTTTTGCGGATGGCAAAGGCAATTTTACTGATGGCCCGTATGAAATTCAATATCCGGAAGATTTCTTTAAGGGTGATTTCTATAAATATGGATTCAATCCAGAGGTTGGCTCTGTGGGGATGCCTGTCGCCACTACCGTTAGGGCTACAATGCCAAAGGAAGGATGGCAGATCCCATTGTTCAGAAAGCTGCCTAATGGTTACACACAAGAAATTCCAAATCCAATATGGAAATACCATAAATACATCCCATATTCAAATCCCGGGAAGGTCCATGACCAGCTTGAATCTTATGGTCTACCGAAGAACCTTGATGATTTTTGCGAAAAAGCACAGCTTGCAAATTATGTGCAATATAAAGCCCTCCTTGAGGGATGGACTTCTAGAATGTGGACTAAATACACCGGTGTTAATATTTGGAAGACTCAAAACCCATGGACTGGCCTTAGAGGTCAGTTTTATGATCATCTCCATGATCAGACGGCTGGTTTTTATGCTTGCCGCAGTGCTGCCGAGCCTATTCATGTGCAGCTCAATCTTGCCACTTATTATATTGAGGTAGTGAACACTACATCAGAGGAACTCTCGGACGTATCTATAGAAACTTCAGTATGGCATGTCGATGGTTCATGCCCTTATTACACTGTTACAGAGAAGCTTTCAATTCCTTCAAAGAGAGTATCACCTATCATCGAGTTGAAATATCCAAAATCAAAGGACGCAAAGCCTGTCTATTTTCTTCTGCTCAAACTCTTCCGGTTGTCGGACAAAAGCATCGTATCAAGGAATTTCAACTGGCTCCATCTTCCGAACGCCGATTACAAGATCTTGGAGCTTCAGCGAGGAAAGAAAGTTCCCCTGAGGATCACTTCCCAAGCATTCATCTCTGGCTCCACTTACAGCATGCAGATGAACGTCCGTAACATATCAACGAAGAACTCAAGCTCTGCAGCTTCGAGCTGCCTGATGGATAACAAGGAGGGTATTAATGAAAAATCTTTGAATAGGATATCCAGCAGCTTTCAATTCTTGAGGTCTGGAAATCGTCCTAGGGTTTTTGAAGTTAATGGATCTGAGTCTGGAGTTGCTTTCTTCCTCCATTTCTCGGTTCATGCTGCAAGTAAGATGGAAAAAGAAGAAGAAGCTGTTGATACTCGCATTCTTCCTGTTCATTATTCTGACAACTACTTCTCAGTGGTTCCGGGTGAGGTTGTATCCATTAATATCTCATTTGAGGCTCCTGAAGGCACTACGCCAAGGGTCGTGCTTCAGGGTTGGAATTACCATGGCCGCGGTTTTTCAGTTTGCTGA

Network for GWHGAAEX017256

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12971.6	NAGLU_N	56	149	4.30E-20
PF05089.11	NAGLU	166	502	2.30E-141
PF12972.6	NAGLU_C	511	792	5.20E-79

Protein Sequence

>GWHPAAEX017256
MKVLLLFFLLQISLFIYSSFPSPSLAGKNSRGNKSVAENILRRAESLRSPSVQLAAAHGVLRRLLPNHTNSFLLKVVPKGLCARFNCFRISNAINSNPNGPEIMIEGSTAVEVSSGLYWYLKYWCGAHISWDKTGGVQVATVPSPGSLPHVESQMVKVERSVPWNYYQNVVTSSYSSAWWDWKRWEKEIDWMALQGVNLPLAFTGQETIWQKVFKDFYVTNEDLGYFFGGPAFLAWARMGNLHGWGGPLSQNWLDQQLNLQKLIIFRMIDLGMTPVLPAFSGNVPAIFKKMFPAANITRLSNWNTVNGDPRWCCTYLLDPSDPLFNEIGRSFINKQIKEYGHITSIYSCDTFNENLPPTNDPNYISSLGTAVYDAMKKGDSDAIWLMQGWLFSSDAEFWKPPQMQSLLHSVPIGKMIVLDLFADVKPIWKISSQFYGVPYVWCMLHNFGGNIEMYGILDAISSGPIDARNSKNSTMVGVGMCMEGIEQNPVVYELMSEMAFHSNRFHVEDWLKSYSYRRYGRADHHIEKAWKILYHSIYNCTDGIADHNRDFIVHFPDISPHLEHHQALHISSKYKHDISPHLELKSNSHEPHLWYSTKDVVDALKLFIDAGSSLEESLTYRYDLVDLTRQVLAKLSNQFYLDAINAYRRNDADGLNQQIQKFTGLVQDIDTLLASDDNFLLGTWLESAKKLAVNHDDRRQFEWNARTQITMWFDNTEYNQSKLHDYANKYWSGLLKNYYLPRASTYFSYLLQSLRNNISFSFEEWNRDWISYSNRWQEGQELYPVKAEGDKEVSEGSMAEMATVGKTKLNSGWLAARSTEVEATGVQLTTTASPSGPSSPWMEAAVPGTVLGTLLKNKLVPDPFYGLNNESILDIADSGREYYTFWFFTTFETKLTESQHAYLNFRAINYSGDVYLNGHKRILQKGMFRRHSLNITDILNPDGKNLLAVIINPPDHPGVIPPQGGQGGDHEIGKDVTAQYVEGWDWMTPIRDRNTGIWDEVSISITGPVKLTDPHVVSSFFDNYTRSYLHTTIDLENLSSRIAECSLTIQVTEGLDKDLLLLEHHHSYEILIPPRALLQYTLSPLFFYKPNLWWPNGMGKQSLYSIEISIDVKGFGESDTWSHQFGFRKIESTIDKDTGGRLFKVNGERIFIRGGNWILSDGLLRLSAKRYMTDIKFHADMNFNMLRCWGGGLAERPEFYHYCDVYGLLVWQEFWITGDCDGRGKPVSNPNGPLDHDLFLLCAHDSIKFLRNHSSLAVWVGGNEQIPPKDINATLMNYLKIHPLFKSHNENNFILSEELSQELTDPSRFLDGTRAYVSGSMWDGFADGKGNFTDGPYEIQYPEDFFKGDFYKYGFNPEVGSVGMPVATTVRATMPKEGWQIPLFRKLPNGYTQEIPNPIWKYHKYIPYSNPGKVHDQLESYGLPKNLDDFCEKAQLANYVQYKALLEGWTSRMWTKYTGVNIWKTQNPWTGLRGQFYDHLHDQTAGFYACRSAAEPIHVQLNLATYYIEVVNTTSEELSDVSIETSVWHVDGSCPYYTVTEKLSIPSKRVSPIIELKYPKSKDAKPVYFLLLKLFRLSDKSIVSRNFNWLHLPNADYKILELQRGKKVPLRITSQAFISGSTYSMQMNVRNISTKNSSSAASSCLMDNKEGINEKSLNRISSSFQFLRSGNRPRVFEVNGSESGVAFFLHFSVHAASKMEKEEEAVDTRILPVHYSDNYFSVVPGEVVSINISFEAPEGTTPRVVLQGWNYHGRGFSVC

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.660
SRP064423	SRR2545915	Juvenile tuber	16.170
SRP108465	SRR5643513	five period of Gastrodia elata	14.620
	SRR5643514	five period of Gastrodia elata	19.100
	SRR5643515	five period of Gastrodia elata	15.800
	SRR5643524	five period of Gastrodia elata	17.980
	SRR5643525	five period of Gastrodia elata	13.550
	SRR5643528	five period of Gastrodia elata	11.900
	SRR5643658	five period of Gastrodia elata	14.160
	SRR5643659	five period of Gastrodia elata	12.160
	SRR5643660	five period of Gastrodia elata	12.300
	SRR5643661	five period of Gastrodia elata	10.670
	SRR5643662	five period of Gastrodia elata	12.010
	SRR5643663	five period of Gastrodia elata	13.250
	SRR5643664	five period of Gastrodia elata	12.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.870
SRP279888	Gastro	Gastrodia elata tuber	13.46
	Juven	Juvenile tuber	15.03
	Mother_Gastro	Mother tuber of Gastrodia elata	9.93
	Mother_Juven	Mother tuber of Juvenile	11.49