Gene detail

Detail information of GWHGAAEX017263/evm.TU.scaffold_80.62

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1248	7.00E-129	Uncharacterized conserved protein
nr	gi\|743803741\|ref\|XP_010927011.1\|	0	PREDICTED: RRP12-like protein isoform X1 [Elaeis guineensis]
trEMBL	tr\|I1NVD1\|I1NVD1_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA01G0382100.1}
TAIR	AT4G23540	7.00E-129	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	1353393	1400734	+

Transcript Sequence
>GWHTAAEX017263 GAAAATCTTGGGTAAATGGTTTGGGTTACCGGAAAAAACGCTTCGTGGTTCGGAATTTGGATCCTTAAACCCTACGAGATTTTTGGGCAGCATTCAGCATCCGCCAAGCAGCCATGAAGCGTAAACCAGAGAGCGGTGGCGACTCCATCGGAGACGAAGAATCCCAAGAGCCACCCATGAGATCCACATCTCCCGCTGCCAAGCCGAAGAAGAAAAACAGGAAAAACGCTGATGTAGAGGATAAGGATCGGAGACGATCCGCAGGAGAACCGGAAGATTATAATGAGGATGAAGCGGAAGAGCGTTTGCCCATCGTTGAATCTAGCGGTGATGTCTGCTGTGCGCTCATGGAGCGCTATGCACGATCCACAGCACCGCAGCACCGCCATCTCTGCGCCACAGCCGCTGCTATGCGGTCCATTCTCTCAGAGGAAGGCCTCCCCCTTACTCCTCCTGCCTATTTTGCTGCTGCCATCACGGCGTTTCAAGATGCCGACCGGTCAGACCGGGAAGGCGTTGCTGCCCTCTCTGCTTTTCTGGCTGTCGTGCTCCAACATGTCACTTCAGAGTCCTTGCCGAAGGCCAAGGCTAAAGACGCAGCCTTTGTTATTGCTTCTTTCATTAGGGATTCTGCTGACTGTTTATCTACCGGTACTTTGCGGTCTATGGTCAAGTCACTGGGTCAGGTGGCGCTGATGGTGGATCTGGAAGACTGGCCTTCCATTGAACTGGCTTTCCACACTCTGCTACTCTTTGCAGTGGATAAGCGTCCAAAGGTTCGAAGATCTGCCCAATCTGGTCTTGAAATACTTTTCAAATATTGCCATGATTCATCCATTGTCAAAAAGGCAAGCAAAGTTGTATATCGTATGCATAGAAAGTACATCACAACAATAAAAATTCTATCTTCAATTGAACTTACAGATGCAACTCTAAACAACAGTCTGTCCAAACCTGAGCATTTGGAAGCCATCCATGTACTAAATGTACTGAATGCGATACTTCCATATCTTTCAGACAAAGTGAGAATAGAGATTTTGTCTGATACTCATAAACTTCTTAGCTGTCATTTTTCATGGCCAACTAGACATATTCTAAGAATTCTGGAGGTACTGCTGGAGCACTTTGATATTAAAGCTCTTGTTGCTCAAGCAGAAAATATCGTTTCAGCTGTCACATCATACATTGCTACTGCTGAAAAGAATCCTGTGGATACCATTGTTTCTGCATCAATATTGTTGAAAAATTTGTTAAAGAAATTGGGAGATGAATTGCCAAGCATGTGGACAAGATACCTTCCTATTGCCTTCACTTCTCTTATAGGATATTTGGGATCTGATTCCGATGCTTCCAAAAATGTGGCGGATATTCTGAAAGAATTTATAAATTTTCATATTAAACAGAGTTTTTTTAGATCTGACAAAGGCCAGTTAAGAAGATATGAGATGGACAGTTGTCCTGAAGCAGCTGCAGTTACATCTATTTGCAAAGTATTAGATAAGATGCTAAAAAAGTGCAGTTTTTCCACCGAACTTATGTTGGAAGTCATATCTGTTTTGTTCCTTAAACTCGGTGGATCCTCATTTTTTTTCATGAAGAAAACTTTGATCATATTATCAAAATTTGCACAAAATGAAGATTCGAAGAGTAATATTCCCCATATTGAGCAATGCGTTGGAACAGCTGTAATTGCAATGGGCCCTGAAAAACTGCTTTCATTGATACCTATAACTTTTGATATAAAGAAGCTGACTTTGTCAAATTCATGGATCATACCAATTTTGAAAAAATATGTAGTTGGAGCCTCTTTACAATATTTTATGGATAATATTGTTCCTCTGGCAAAATGTATTCAGGAAGCATACAAAAATGATAATAAAGAATTCATTCAAAAGAGTCTGCTATCGTATTTTAGTAGCCTTTGGGATCTACTTCCCGCCTTCTGTCGCTACCCAACTGACATATCAGAGAAATTTGAATCATTATCTATGTTACTTGTTGTTGTTCTGAAGGAAGAGCCATCTTTACACGAAAGCATTGCTTTGGCTTTACAGATACTTGTCCATTCAAATAGAGAATATAGTAGACACTGTGTAGATGATCCTAGCAGCATCTTTTCTCAAAAATTTAATATGGAATTTATAAGGTTTTGCTATTCAAAGAAAGTTGCATGTAAGAATATGAAAGCATTGGCTTCTAGGTCGGTGGAATTATTTCAGATTCTCAAGGAAATATTCTTTGAATATCCAGATAGGCGTGGATGCATTAAGGATGCTCTTGGATCTCTTGGTTTCATTATTCCAAGTGAATACATAAAGAGCTTTTTTCTTTCAACTTTTAAAACTATTGAACAATCAAATAGTTTAATAAAGTCTGAGAGTATACATGATCATGCGCAACTAGAAAACAAAAAGGATGGTGAGGCAAAAGCAGGCTTTGAGAAAAACGAACAGAGCTGTTTACTGATGGAACTTGCATCGTCTTTTGTTGAAGCAGCAGACACGGATCTTACCCATATAATCTTTGATTTTATTAAATCTTCTCTTTTGAATACCAATGCAGTATTCCAATCAGAAGCTTACTTTACTTTAAATAGAATTTTGAAGGAAAAGGACTCGTACTCTTGTGCACAACTTGATGTGCTGATTGAATTGCTTTTTACTGTGAAGCCACCGATTGATGCTAGCACACTGAAAACTCGATTTTCATGCTTTGATCATTTGTTAGTTTACATGCTAAAGAGCAATGTTGCTGACATGAATATCAAAGCATTTTTTATTCTGAATGAGATAATACTTACACTTAAGTCTAAGAAGGAGTCTAGAAAGTTGGCATATGATTCACTCTTAAACATAAGTATCAAGTTGAAGACCCTCCAGTCTGATTGCACTGATTCAAATATTTTGCATCTTTTTACCATGGTGATGGGCTATCTTTCAAGCTCCTCTCCTCACATCATGAGCGGAGCAGTTTCCGCCCTCTCGCTACTGATATACCACGATGCCACCTTCTGCCTCTCTGTGCCCAACCTAATACCTTCTGTTTTGGTTTTGCTTCAAAACAAATCAAATGAAGTTATAAAAGCAGCTCTTGGCTTCATTAAAGTGTTAGTGTCATCCCTAAAATGCAATGATTTGAGAAAGCTATTACCCGAAATTCTCCAAGGAGTGTTACCTTGGTCCTTAGTATCAAAACATCATTTTAGATCAAAGGTCGGCATCATCCTTGAAATCTTGATCAGAAAGTGTGGTTCGGAATCAGTTGAATGCCAAACGACCGACAAGTACAAGGGATTTGTGAAGTCCATTAAAGAGGGACGAGTAAATCGAAAACTAGCCAAAGGAGCCAATGATTCCGAATCCACAGATTTGATAGCAGATAGAGGCAAGAAAAGGCAGCGCGATGACGAAAAGTTCTCTAAATTTAAATCCGAAAGGCGCTCCAAATTTAAATCGAAAGATGAGAGAATAGGTAAGAAACCTGATAAGAGTTTCTCGAGCAATCAGAATTATGCTAGGACGACGAAAAAGGGGCTTAGAAATCGAGCGAGCAATCAAAGGAGGAAATATGCAAAAAAGCAAGGGAGTGGAGTTGATAGTAGTAGAACAAACAGGCCTGAAGCAGATAAATCAAGGTTCAATAACTGCAGCAGGAGGAAAATATAGCAGCTCTTTCATGGAGAAGAGCTTCAAGGGCGAGTTCGCTGTAGATGGCTTGTTTGAGCATGCATTTTTTAGGCTTCAGAATGCATTATTGTATCATGTGTATTTGTTGTCACATTAATAAATTTGAATTATTGTGTTTTGTAAAGTATGTTCATTTTATTTTTTATTAGAAGCTATTGTGACAATCTTATCAATCTTGAATCTCTCATAGTAGAAAATGTCAAT

Network for GWHGAAEX017263

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08161.11	NUC173	457	653	6.60E-45

Protein Sequence

>GWHPAAEX017263
MKRKPESGGDSIGDEESQEPPMRSTSPAAKPKKKNRKNADVEDKDRRRSAGEPEDYNEDEAEERLPIVESSGDVCCALMERYARSTAPQHRHLCATAAAMRSILSEEGLPLTPPAYFAAAITAFQDADRSDREGVAALSAFLAVVLQHVTSESLPKAKAKDAAFVIASFIRDSADCLSTGTLRSMVKSLGQVALMVDLEDWPSIELAFHTLLLFAVDKRPKVRRSAQSGLEILFKYCHDSSIVKKASKVVYRMHRKYITTIKILSSIELTDATLNNSLSKPEHLEAIHVLNVLNAILPYLSDKVRIEILSDTHKLLSCHFSWPTRHILRILEVLLEHFDIKALVAQAENIVSAVTSYIATAEKNPVDTIVSASILLKNLLKKLGDELPSMWTRYLPIAFTSLIGYLGSDSDASKNVADILKEFINFHIKQSFFRSDKGQLRRYEMDSCPEAAAVTSICKVLDKMLKKCSFSTELMLEVISVLFLKLGGSSFFFMKKTLIILSKFAQNEDSKSNIPHIEQCVGTAVIAMGPEKLLSLIPITFDIKKLTLSNSWIIPILKKYVVGASLQYFMDNIVPLAKCIQEAYKNDNKEFIQKSLLSYFSSLWDLLPAFCRYPTDISEKFESLSMLLVVVLKEEPSLHESIALALQILVHSNREYSRHCVDDPSSIFSQKFNMEFIRFCYSKKVACKNMKALASRSVELFQILKEIFFEYPDRRGCIKDALGSLGFIIPSEYIKSFFLSTFKTIEQSNSLIKSESIHDHAQLENKKDGEAKAGFEKNEQSCLLMELASSFVEAADTDLTHIIFDFIKSSLLNTNAVFQSEAYFTLNRILKEKDSYSCAQLDVLIELLFTVKPPIDASTLKTRFSCFDHLLVYMLKSNVADMNIKAFFILNEIILTLKSKKESRKLAYDSLLNISIKLKTLQSDCTDSNILHLFTMVMGYLSSSSPHIMSGAVSALSLLIYHDATFCLSVPNLIPSVLVLLQNKSNEVIKAALGFIKVLVSSLKCNDLRKLLPEILQGVLPWSLVSKHHFRSKVGIILEILIRKCGSESVECQTTDKYKGFVKSIKEGRVNRKLAKGANDSESTDLIADRGKKRQRDDEKFSKFKSERRSKFKSKDERIGKKPDKSFSSNQNYARTTKKGLRNRASNQRRKYAKKQGSGVDSSRTNRPEADKSRFNNCSRRKI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.850
SRP064423	SRR2545915	Juvenile tuber	23.280
SRP108465	SRR5643513	five period of Gastrodia elata	9.010
	SRR5643514	five period of Gastrodia elata	10.040
	SRR5643515	five period of Gastrodia elata	9.760
	SRR5643524	five period of Gastrodia elata	11.160
	SRR5643525	five period of Gastrodia elata	5.350
	SRR5643528	five period of Gastrodia elata	4.420
	SRR5643658	five period of Gastrodia elata	3.970
	SRR5643659	five period of Gastrodia elata	10.190
	SRR5643660	five period of Gastrodia elata	11.560
	SRR5643661	five period of Gastrodia elata	11.500
	SRR5643662	five period of Gastrodia elata	8.970
	SRR5643663	five period of Gastrodia elata	10.030
	SRR5643664	five period of Gastrodia elata	11.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.920
SRP279888	Gastro	Gastrodia elata tuber	12.30
	Juven	Juvenile tuber	19.24
	Mother_Gastro	Mother tuber of Gastrodia elata	5.37
	Mother_Juven	Mother tuber of Juvenile	9.06