Detail information of GWHGAAEX017264/evm.TU.scaffold_80.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743845265|ref|XP_010938538.1| | 0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q8GWK2|AP2L4_ARATH | 1.00E-112 | AP2-like ethylene-responsive transcription factor At2g41710 |
| trEMBL | tr|K3Z5Y4|K3Z5Y4_SETIT | 2.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si021952m} |
| TAIR | AT2G41710 | 1.00E-114 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 1403860 | 1424908 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017264
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 65 | 123 | 3.50E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 81.940 |
| SRR2545915 | Juvenile tuber | 75.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.580 |
| SRR5643514 | five period of Gastrodia elata | 22.910 | |
| SRR5643515 | five period of Gastrodia elata | 18.340 | |
| SRR5643524 | five period of Gastrodia elata | 19.980 | |
| SRR5643525 | five period of Gastrodia elata | 12.780 | |
| SRR5643528 | five period of Gastrodia elata | 10.290 | |
| SRR5643658 | five period of Gastrodia elata | 15.200 | |
| SRR5643659 | five period of Gastrodia elata | 19.980 | |
| SRR5643660 | five period of Gastrodia elata | 19.950 | |
| SRR5643661 | five period of Gastrodia elata | 20.110 | |
| SRR5643662 | five period of Gastrodia elata | 25.840 | |
| SRR5643663 | five period of Gastrodia elata | 27.250 | |
| SRR5643664 | five period of Gastrodia elata | 25.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 62.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 54.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 59.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 94.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 64.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 80.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 81.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 46.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.60 |
| Juven | Juvenile tuber | 82.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.20 | |
| Mother_Juven | Mother tuber of Juvenile | 24.96 |