Detail information of GWHGAAEX017265/evm.TU.scaffold_80.64
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479126781|ref|YP_005066741.1| | 1.00E-92 | 50S ribosomal protein L1 [Arthrospira platensis NIES-39] |
| KOG | KOG1569 | 5.00E-152 | 50S ribosomal protein L1 |
| nr | gi|672117692|ref|XP_008782038.1| | 7.05E-157 | PREDICTED: 50S ribosomal protein L1, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|Q9LY66|RK1_ARATH | 1.00E-152 | 50S ribosomal protein L1, chloroplastic (Precursor) |
| trEMBL | tr|M0RPU0|M0RPU0_MUSAM | 5.00E-154 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06100_001} |
| TAIR | AT3G63490 | 5.00E-152 | Ribosomal protein L1p/L10e family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 1426057 | 1455400 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017265
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00687.20 | Ribosomal_L1 | 136 | 326 | 2.60E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02863 | RP-L1, MRPL1, rplA | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0015934 | Cellular Component | large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.520 |
| SRR2545915 | Juvenile tuber | 21.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.920 |
| SRR5643514 | five period of Gastrodia elata | 25.290 | |
| SRR5643515 | five period of Gastrodia elata | 25.150 | |
| SRR5643524 | five period of Gastrodia elata | 26.000 | |
| SRR5643525 | five period of Gastrodia elata | 34.710 | |
| SRR5643528 | five period of Gastrodia elata | 30.450 | |
| SRR5643658 | five period of Gastrodia elata | 35.760 | |
| SRR5643659 | five period of Gastrodia elata | 32.100 | |
| SRR5643660 | five period of Gastrodia elata | 31.600 | |
| SRR5643661 | five period of Gastrodia elata | 36.050 | |
| SRR5643662 | five period of Gastrodia elata | 39.770 | |
| SRR5643663 | five period of Gastrodia elata | 36.190 | |
| SRR5643664 | five period of Gastrodia elata | 37.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.37 |
| Juven | Juvenile tuber | 45.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.51 | |
| Mother_Juven | Mother tuber of Juvenile | 27.79 |