Detail information of GWHGAAEX017267/evm.TU.scaffold_80.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186683200|ref|YP_001866396.1| | 7.00E-09 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| KOG | KOG0027 | 1.00E-29 | Calmodulin and related proteins (EF-Hand superfamily) |
| nr | gi|672112315|ref|XP_008805121.1| | 1.89E-42 | PREDICTED: putative calcium-binding protein CML19 [Phoenix dactylifera] |
| Swissprot | tr|Q8RYK0|CML31_ORYSJ | 3.00E-38 | Probable calcium-binding protein CML31 |
| trEMBL | tr|K3XPB9|K3XPB9_SETIT | 1.00E-38 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si003742m} |
| TAIR | AT1G76640 | 1.00E-29 | Calcium-binding EF-hand family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 1495343 | 1496224 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017267
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13833.5 | EF-hand_8 | 21 | 67 | 1.00E-08 |
| PF13499.5 | EF-hand_7 | 81 | 143 | 2.90E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 74.500 |
| SRR2545915 | Juvenile tuber | 43.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 107.760 |
| SRR5643514 | five period of Gastrodia elata | 109.150 | |
| SRR5643515 | five period of Gastrodia elata | 124.980 | |
| SRR5643524 | five period of Gastrodia elata | 72.600 | |
| SRR5643525 | five period of Gastrodia elata | 158.500 | |
| SRR5643528 | five period of Gastrodia elata | 51.900 | |
| SRR5643658 | five period of Gastrodia elata | 56.830 | |
| SRR5643659 | five period of Gastrodia elata | 109.010 | |
| SRR5643660 | five period of Gastrodia elata | 61.910 | |
| SRR5643661 | five period of Gastrodia elata | 99.280 | |
| SRR5643662 | five period of Gastrodia elata | 120.580 | |
| SRR5643663 | five period of Gastrodia elata | 93.030 | |
| SRR5643664 | five period of Gastrodia elata | 846.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 454.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 340.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 297.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 310.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 348.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 385.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 469.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 343.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 243.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 408.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 563.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 563.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 71.27 |
| Juven | Juvenile tuber | 70.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 118.71 | |
| Mother_Juven | Mother tuber of Juvenile | 82.26 |