Detail information of GWHGAAEX017269/evm.TU.scaffold_80.68
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3494 | 4.00E-32 | Ubiquinol cytochrome c oxidoreductase, subunit QCR9 |
| nr | gi|566167485|ref|XP_006384669.1| | 7.91E-36 | hypothetical protein POPTR_0004s20010g [Populus trichocarpa] |
| Swissprot | tr|P46270|QCR9_SOLTU | 3.00E-28 | Cytochrome b-c1 complex subunit 9 |
| trEMBL | tr|A9P8V2|A9P8V2_POPTR | 3.00E-36 | Uncharacterized protein {ECO:0000313|EMBL:ERP62466.1} |
| TAIR | AT3G52730 | 4.00E-32 | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 1498110 | 1511045 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017269
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05365.11 | UCR_UQCRX_QCR9 | 15 | 63 | 1.40E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00419 | QCR9, UCRC | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 | ||
| Cardiac muscle contraction | map04260 | ||
| Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006122 | Biological Process | mitochondrial electron transport, ubiquinol to cytochrome c |
| GO:0005743 | Cellular Component | mitochondrial inner membrane |
| GO:0005750 | Cellular Component | mitochondrial respiratory chain complex III |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 82.890 |
| SRR2545915 | Juvenile tuber | 109.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 278.250 |
| SRR5643514 | five period of Gastrodia elata | 500.190 | |
| SRR5643515 | five period of Gastrodia elata | 341.020 | |
| SRR5643524 | five period of Gastrodia elata | 487.090 | |
| SRR5643525 | five period of Gastrodia elata | 382.320 | |
| SRR5643528 | five period of Gastrodia elata | 370.690 | |
| SRR5643658 | five period of Gastrodia elata | 292.240 | |
| SRR5643659 | five period of Gastrodia elata | 184.940 | |
| SRR5643660 | five period of Gastrodia elata | 200.220 | |
| SRR5643661 | five period of Gastrodia elata | 194.710 | |
| SRR5643662 | five period of Gastrodia elata | 163.000 | |
| SRR5643663 | five period of Gastrodia elata | 168.180 | |
| SRR5643664 | five period of Gastrodia elata | 152.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 233.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 382.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 335.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 162.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 211.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 201.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 210.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 215.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 435.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 334.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 425.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 425.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 230.75 |
| Juven | Juvenile tuber | 179.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 206.17 | |
| Mother_Juven | Mother tuber of Juvenile | 184.01 |