Detail information of GWHGAAEX017270/evm.TU.scaffold_80.69
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|407647261|ref|YP_006811020.1| | 4.00E-09 | signal transduction protein [Nocardia brasiliensis ATCC 700358] |
| KOG | KOG0027 | 7.00E-29 | Calmodulin and related proteins (EF-Hand superfamily) |
| nr | gi|125529162|gb|EAY77276.1| | 2.04E-39 | hypothetical protein OsI_05250 [Oryza sativa Indica Group] |
| Swissprot | tr|Q8RYJ8|CML19_ORYSJ | 1.00E-40 | Putative calcium-binding protein CML19 |
| trEMBL | tr|A2WZ80|A2WZ80_ORYSI | 8.00E-40 | Putative uncharacterized protein {ECO:0000313|EMBL:EAY77276.1} |
| TAIR | AT1G76640 | 7.00E-29 | Calcium-binding EF-hand family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 1515239 | 1516183 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017270
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13499.5 | EF-hand_7 | 15 | 65 | 2.00E-07 |
| PF13833.5 | EF-hand_8 | 92 | 140 | 1.90E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 66.530 |
| SRR2545915 | Juvenile tuber | 20.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.820 |
| SRR5643514 | five period of Gastrodia elata | 14.390 | |
| SRR5643515 | five period of Gastrodia elata | 77.450 | |
| SRR5643524 | five period of Gastrodia elata | 12.310 | |
| SRR5643525 | five period of Gastrodia elata | 426.610 | |
| SRR5643528 | five period of Gastrodia elata | 39.010 | |
| SRR5643658 | five period of Gastrodia elata | 102.440 | |
| SRR5643659 | five period of Gastrodia elata | 14.610 | |
| SRR5643660 | five period of Gastrodia elata | 10.530 | |
| SRR5643661 | five period of Gastrodia elata | 20.960 | |
| SRR5643662 | five period of Gastrodia elata | 30.390 | |
| SRR5643663 | five period of Gastrodia elata | 38.610 | |
| SRR5643664 | five period of Gastrodia elata | 609.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.94 |
| Juven | Juvenile tuber | 0.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.96 | |
| Mother_Juven | Mother tuber of Juvenile | 8.01 |