Gene detail

Detail information of GWHGAAEX017275/evm.TU.scaffold_80.74

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4271	Rho-GTPase activating protein
nr	gi\|695078900\|ref\|XP_009386851.1\|	PREDICTED: rho GTPase-activating protein 7-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8RWQ4\|RGAP7_ARATH	Rho GTPase-activating protein 7
trEMBL	tr\|M0U8V3\|M0U8V3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP13440_001}
TAIR	AT5G12150	Rho GTPase activation protein (RhoGAP) with PH domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	1571316	1634547	+

Transcript Sequence
>GWHTAAEX017275 ATGTCGTCGGCTCCGGCCGCGGCGTCGATGTTTGATCGCCACAGGCTTGTAGCATCTAACACGGTGTTCAAGAGTGGACCATTGTTCATATCATCAAAAGGAATCGGTTGGAAGTCTTGGAAGAAGCGATGGTTTATTCTTACCCGCACTTCTTTGGTTTTCTTCAAAAGTGATCCTTGTGCTTTATACCAAAGAGGCAGTGACACCAGTATCACTCTTGGGGGTATCGATCTGAATAATTCTGGAAGTGTAGTTGTGAAGGAAGACAAAAAATTACTGACGGTCTTGTTTCCTGGTGGCCGTGATGGACGAACATTCACCCTCAAGGCAGAGACAATGGAGGATTTATTTGAGTGGAGAACTGCTTTGGAAAAAGCCCTGGCACAAGCTCCAAATGCAGCTCTTGTTATTGGGAGCAATGGAATATTTCGCAATGATAATTCAGATGCATTTGACGGATCTGTTCAACATTGGAGAGATAAGAGACCCATAAAATCATTGGTTGTTGGGAGACCAATTTTACTTGCATTAGAAGACATTGATGGGTCGCCTTCCTTCCTGGAAAAAGCTTTACAATTTTTAGAAAATCACGGAACAAAAATAGAAGGAATTTTGAGGCAGGCAGCTGATGTTGAGGAGGTTGAGCGCAGAGTTCAGGAATACGAGCAGGGAAGGACAGAATTTACTGCAGAAGAAGATGCACATGTTATTGGCGATTGTGTTAAGCATGTTCTTCGGGAGCTACCATCATCTCCGGTACCTGCATCCTGCTGTAATGCTTTGCTGGAAGCATATAGATTTGAACATAGGGAAGAACGCTTGAAAGAAATGCATTCTGCAATATTGAACACATTTCCCGAACCAAATCGCAAGCTACTACAAAGGGTTTTGAAAATGATGCACACCATTGCCTCACATAGCACCGAGAATCGGATGACTCCATCTGCTGTTGCTGCTTGTATGGCACCTTTGTTACTGCGTCCGCTACTTGCTGGTGAATGTGAACTAGAGGAAGACTTTGATGCAAACGGTGGTAGTTCTGCTCAGCTTTTGGCTGCTGCAAATGCTGCCAACAATGCTCAGGCTATCATCACAACTCTTCTTGAGGAGTATGCAAATATTTTTGATGGTTGTAATCTTCAAAGGTGCTCTTTGTCACCAGGATCTCACATTGAAGATAGTGGTAGTGATGAATCTGATGAAGTGGAAAAAGATGTCAAGGATAGTGGTGATCGCAATGCAGAAAATGATGATCATCAAGAAATAATTGTTGATTCTGAACGCATTTTAAGTGGAAAACTGAGTGAAAGCAGTGGTTATGCAGGCAGCGACCTTTATGAATGCAAGGCATTTGCTGGTGAAGATTCTGATGCAGATTCTTTTGCAGATAATAAAGACGTAACAACAAAAAACAAGTCAATTGAGGTTTCTCAAGATGATGGCGATCTTGATAAAACAACCCAAAGTTTAGATGACACTTTGGCCAAGAAGGATGTCCTAAATGAGTTTCCTTTGCGTGAAACTCCTCTTTCTATGGGGGATATCTTAACCTCTTTAGATTCTGGGATTCCTTTAACTCATCATACTGCTGAATATTGTGTGAATAGACACATTACTAAGCTCAATGGTTCACATAGTCATGCAAAGAGGACCAATTTTTGGGGTCGTAACAATGCTAGAAAGAACCGCTCATTGGATTCTGTTGACTCATCGGGTGACGAGGAGCTTGCGATTCAGAGGCTAGAAATCACGAAGAATGACCTTCAAATTAGAATTGCTAAAGAGGCCAAAGACAATGCAGTTTTGCAAGCTAGCTTGGAAAGACGAAAGCAGGCATTGCATGAATGTCGCTTAGCACTAGAACAAGAT

Network for GWHGAAEX017275

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00169.28	PH	23	127	2.20E-13
PF00620.26	RhoGAP	184	328	1.70E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007165	Biological Process	signal transduction

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.460
SRP064423	SRR2545915	Juvenile tuber	64.190
SRP108465	SRR5643513	five period of Gastrodia elata	41.540
	SRR5643514	five period of Gastrodia elata	42.490
	SRR5643515	five period of Gastrodia elata	36.520
	SRR5643524	five period of Gastrodia elata	42.190
	SRR5643525	five period of Gastrodia elata	31.090
	SRR5643528	five period of Gastrodia elata	28.860
	SRR5643658	five period of Gastrodia elata	38.550
	SRR5643659	five period of Gastrodia elata	31.890
	SRR5643660	five period of Gastrodia elata	31.730
	SRR5643661	five period of Gastrodia elata	30.950
	SRR5643662	five period of Gastrodia elata	32.890
	SRR5643663	five period of Gastrodia elata	33.370
	SRR5643664	five period of Gastrodia elata	32.520
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.540
SRP279888	Gastro	Gastrodia elata tuber	33.32
	Juven	Juvenile tuber	38.32
	Mother_Gastro	Mother tuber of Gastrodia elata	22.66
	Mother_Juven	Mother tuber of Juvenile	38.53