Detail information of GWHGAAEX017279/evm.TU.scaffold_80.78


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743845358|ref|XP_010938563.1|2.95E-74PREDICTED: uncharacterized protein LOC105057609 [Elaeis guineensis]
trEMBLtr|B9EWH9|B9EWH9_ORYSJ5.00E-74Uncharacterized protein {ECO:0000313|EMBL:EEE56020.1}
TAIRAT5G194302.00E-54RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008417269061737978-
Transcript Sequence

Network for GWHGAAEX017279

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_239822.90E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.490
SRR2545915Juvenile tuber17.610
SRP108465SRR5643513five period of Gastrodia elata28.350
SRR5643514five period of Gastrodia elata30.650
SRR5643515five period of Gastrodia elata40.740
SRR5643524five period of Gastrodia elata34.060
SRR5643525five period of Gastrodia elata100.360
SRR5643528five period of Gastrodia elata103.570
SRR5643658five period of Gastrodia elata93.210
SRR5643659five period of Gastrodia elata36.970
SRR5643660five period of Gastrodia elata29.630
SRR5643661five period of Gastrodia elata45.410
SRR5643662five period of Gastrodia elata41.840
SRR5643663five period of Gastrodia elata32.070
SRR5643664five period of Gastrodia elata42.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.730
SRR6049655Rhizomagastrodiae_C368-T10_good_125.000
SRR6049656Rhizomagastrodiae_C368-T07_good_124.300
SRR6049657Rhizomagastrodiae_C368-T07_good_124.710
SRR6049658Rhizomagastrodiae_C368-T04_good_126.350
SRR6049659Rhizomagastrodiae_C368-T04_good_122.910
SRR6049660Rhizomagastrodiae_C368-T01_good_127.740
SRR6049661Rhizomagastrodiae_C368-T04_good_126.350
SRR6049662Rhizomagastrodiae_C368-T01_good_123.840
SRR6049663Rhizomagastrodiae_C368-T01_good_120.670
SRR6049664Rhizomagastrodiae_C368-T10_good_123.590
SRR6049665Rhizomagastrodiae_C368-T10_good_123.590
SRP279888GastroGastrodia elata tuber 30.40
JuvenJuvenile tuber32.59
Mother_GastroMother tuber of Gastrodia elata 106.08
Mother_JuvenMother tuber of Juvenile 77.28