Detail information of GWHGAAEX017283/evm.TU.scaffold_80.85


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-33FOG: PPR repeat
nrgi|672180116|ref|XP_008810240.1|1.11E-45PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Phoenix dactylifera]
Swissprottr|P93011|PP182_ARATH3.00E-34Pentatricopeptide repeat-containing protein At2g33760
trEMBLtr|V4UJT4|V4UJT4_9ROSI2.00E-38Uncharacterized protein {ECO:0000313|EMBL:ESR62576.1} (Fragment)
TAIRAT2G337601.00E-33Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008418657481866245+
Transcript Sequence

Network for GWHGAAEX017283

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.540
SRR2545915Juvenile tuber1.240
SRP108465SRR5643513five period of Gastrodia elata1.020
SRR5643514five period of Gastrodia elata1.740
SRR5643515five period of Gastrodia elata1.180
SRR5643524five period of Gastrodia elata2.470
SRR5643525five period of Gastrodia elata0.560
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.200
SRR5643659five period of Gastrodia elata0.820
SRR5643660five period of Gastrodia elata2.260
SRR5643661five period of Gastrodia elata3.650
SRR5643662five period of Gastrodia elata4.150
SRR5643663five period of Gastrodia elata2.070
SRR5643664five period of Gastrodia elata4.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.270
SRR6049655Rhizomagastrodiae_C368-T10_good_12.440
SRR6049656Rhizomagastrodiae_C368-T07_good_10.450
SRR6049657Rhizomagastrodiae_C368-T07_good_11.610
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_11.450
SRR6049660Rhizomagastrodiae_C368-T01_good_10.870
SRR6049661Rhizomagastrodiae_C368-T04_good_12.680
SRR6049662Rhizomagastrodiae_C368-T01_good_13.640
SRR6049663Rhizomagastrodiae_C368-T01_good_11.590
SRR6049664Rhizomagastrodiae_C368-T10_good_12.380
SRR6049665Rhizomagastrodiae_C368-T10_good_12.380
SRP279888GastroGastrodia elata tuber 2.59
JuvenJuvenile tuber4.21
Mother_GastroMother tuber of Gastrodia elata 0.31
Mother_JuvenMother tuber of Juvenile 0.86